7828f9c71e
data: Compress using xz
2024-04-26 18:57:11 +02:00
88a2272b1c
style: Fix issues with updated Bootstrap
2024-03-14 19:45:14 +01:00
6ef80483d2
Add CMap dataset
2024-03-14 19:40:25 +01:00
375c5b27ba
Add sample data to gene selector
2022-12-16 15:11:29 +01:00
673bad39f7
Add API example application
2022-12-16 15:03:25 +01:00
254c43b016
Add screenshots to help page
2022-12-16 14:26:00 +01:00
a046ed67c4
Add help page
2022-12-16 14:10:08 +01:00
c6116d363c
Update overall style
2022-12-16 11:44:32 +01:00
373238b4bc
plots: Use branded colors
2022-12-16 11:31:30 +01:00
588bf61673
Fix content styling
2022-12-15 13:14:34 +01:00
78da07e12a
Add API documentation
2022-12-11 21:03:41 +01:00
7f70a0c90b
Add API using plumber
2022-12-11 19:08:22 +01:00
26a209aade
Use two-sided Wilcoxon test
2022-12-11 18:41:34 +01:00
995b31646e
Allow setting a custom default dataset
2022-12-02 15:16:37 +01:00
c14208c2b2
Add GTEx tissues dataset
2022-12-01 21:34:07 +01:00
510fafeb6e
Allow selecting the expression dataset
2022-12-01 21:23:46 +01:00
2f24812c90
Export plot functions
2022-11-30 15:27:00 +01:00
a6f0a64c2c
Use package's ranking function for included data
2022-11-30 14:49:42 +01:00
698ea5086a
Move analysis into the package
2022-11-30 14:32:40 +01:00
d25bb424b1
Update precomputed results
2022-10-07 23:44:16 +02:00
670357f01d
Change sidebar headings
2022-10-07 23:14:29 +02:00
3829154c1e
Use newly computed metrics
2022-10-07 23:14:29 +02:00
76f81ab6a7
Introduce more variation measures
2022-10-07 23:14:29 +02:00
2eec3285f9
Reduce memory footprint during analysis
2022-10-07 23:14:29 +02:00
f59a71b16c
Use GeTMM normalization
2022-10-07 23:14:29 +02:00
c97ee1ca30
Improve gene results tables
2022-08-22 16:22:17 +02:00
e621761fd6
Show relative increase in GSEA
2022-07-22 09:03:13 +02:00
22dedfc843
Add link to g:Profiler
2022-07-22 08:51:05 +02:00
015b51e77c
Require greater values in alternative hypothesis
2022-07-18 13:52:14 +02:00
3d7c508a83
gsea: Improve smoothing resolution
2022-07-15 08:57:10 +02:00
19b395a564
Reverse axes in distribution plots
2022-07-13 18:32:26 +02:00
aed13425ed
Include trend line in GSEA plot
2022-07-02 23:37:13 +02:00
cc17c13888
Use logarithmic normalization
...
This commit also changes the way the standard deviation and mean
expression are computed in general. Now, samples where the gene is not
expressed at all are excluded before the computation.
2022-07-02 17:52:05 +02:00
af6b5561e4
Use random sample for more than 100 genes
2022-07-01 12:37:07 +02:00
7f67dec72e
Show percentiles in overview plot
2022-06-22 20:23:48 +02:00
1bd5e41c8f
Add additional information page
2022-06-22 19:34:39 +02:00
07fea8d6a2
scripts: Add genes script
2022-06-22 19:10:28 +02:00
f341031753
ranking: Fix total weight calculation
2022-06-22 19:09:21 +02:00
af364b1da8
gsea: Show all sources in plot
2022-06-22 19:07:15 +02:00
4cb08de325
scripts: Add input and analysis script
2022-06-22 19:06:56 +02:00
51c4847949
ui: Move custom css to toplevel div
2022-06-22 13:57:20 +02:00
03516d9cc8
Fix typo in README
2022-06-22 11:11:03 +00:00
27f66d7f35
Add custom genes details table
2022-06-22 12:39:26 +02:00
989655307b
gsea: Categorize by GO subsection
2022-06-22 12:36:14 +02:00
ba1f9f3a7b
Add script for performing a bucket-wise GSEA
2022-06-15 10:25:11 +02:00
8a96a6eca9
Update gene data based on the suggested ranking
...
This also exports the ranking function itself for external use.
2022-06-15 10:24:10 +02:00
e290aba9ab
Fix details table data selection
2022-06-14 14:04:39 +02:00
2e3521cbd9
Debounce custom gene selection
2022-06-14 13:50:25 +02:00
add8a4bd76
Compute and display confidence interval
2022-06-06 16:15:31 +02:00
882891da53
Reintroduce mean expression as metric
2022-06-06 15:56:34 +02:00
