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Interactive web application for analyzing ubiquitously expressed genes https://ubigen.uni-rostock.de
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Elias Projahn add8a4bd76 Compute and display confidence interval
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data Transform mean and sd expression using log 2022-06-06 15:48:24 +02:00
man Add host parameter 2022-05-12 13:37:53 +02:00
R Compute and display confidence interval 2022-06-06 16:15:31 +02:00
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NAMESPACE Add gene selector for custom genes 2022-05-30 21:27:18 +02:00
README.md Add readme 2022-06-02 19:30:31 +02:00

README.md

Ubigen

This R package contains precomputed data including comparisons in gene expression within the GTEx database. It provides a graphical interface to analyze and visualize those data to rank genes based on how ubiquitously expressed they are.

Installation

You can install the development version of ubigen using:

# install.packages("remotes")
remotes::install_git("https://code.johrpan.de/johrpan/ubigen.git")

Usage

You only need one function to get started. It will run the application and serve the graphical user interface which can be viewed using your preferred web browser.

ubigen::run_app()

For additional information, take a look at the built-in documentation (?ubigen::run_app).

License

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the [GNU Affero General Public License}(https://www.gnu.org/licenses/agpl-3.0.html) for more details.