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Interactive web application for analyzing ubiquitously expressed genes https://ubigen.uni-rostock.de
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README.md

Ubigen

Ubigen is an interactive web application for analyzing ubiquitously expressed genes. It is publicly available at ubigen.uni-rostock.de. This repository contains an R package including the input data, the methods and the code for the interactive web interface.

Installation and Usage

Local

You can install the development version of ubigen using:

# install.packages("pak")
pak::pkg_install("johrpan/ubigen")

You only need one function to get started. It will run the application and serve the graphical user interface which can be viewed using your preferred web browser:

ubigen::run_app()

For additional information on using the R package, take a look at the built-in documentation (?ubigen::run_app).

Server

The Dockerfile included in this repository can be used to deploy Ubigen on a server. It exposes the web application at port 3464. We recommend setting up a reverse proxy to enable TLS. Prebuilt Docker images are available on Docker Hub. You can get the latest release using:

docker pull johrpan/ubigen

Running the image like this will expose an unencrypted HTTP server at port 80:

docker run -p 80:3464 johrpan/ubigen

License

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.