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v0.1.0

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• 292c3f7b2c Fix typo in ui main Elias Projahn 2025-05-11 13:33:29 +02:00
• 0d2e871151 scripts: Rename "Venn" to "Venn 88" Elias Projahn 2025-04-25 17:27:35 +02:00
• eac34af8aa Advertise prebuilt docker images Elias Projahn 2025-03-23 20:58:27 +01:00
• 66ebf66b4a
  Create docker-image-push.yml v0.1.0 Elias Projahn 2025-03-23 20:44:42 +01:00
• bfde6c23f2 Create docker-ci.yml Elias Projahn 2025-03-23 20:31:19 +01:00
• df8cd2f0c2 Version 0.1.0 Elias Projahn 2025-03-05 17:53:13 +01:00
• 5b5c641a47 Add Dockerfile Elias Projahn 2025-03-05 17:22:57 +01:00
• 753beeed71 Hide API docs by default Elias Projahn 2025-03-05 17:03:07 +01:00
• 709dc0d0ed Update README Elias Projahn 2025-03-05 16:36:19 +01:00
• 13b3c2b119 app: Expose Shiny app object Elias Projahn 2025-03-05 15:31:49 +01:00
• 6f84555b9f Update repository URLs Elias Projahn 2025-03-04 19:56:52 +01:00
• 0e17b4ec6a Add GitLab CI gitlab Elias Projahn 2025-03-05 20:10:45 +01:00
• 3a1658d3bb Version 0.1.0 Elias Projahn 2025-03-05 17:53:13 +01:00
• a86b28b2fa Show whether the running instance is for staging Elias Projahn 2025-03-05 17:52:41 +01:00
• 414dba5693 Add Dockerfile Elias Projahn 2025-03-05 17:22:57 +01:00
• 401e327fdc Hide API docs by default Elias Projahn 2025-03-05 17:03:07 +01:00
• 4f5183aa10 Update README Elias Projahn 2025-03-05 16:36:19 +01:00
• a7d02bc9f2 app: Expose Shiny app object Elias Projahn 2025-03-05 15:31:49 +01:00
• 766a84291b Update repository URLs Elias Projahn 2025-03-04 19:56:52 +01:00
• 6ec0a2a4de Set minimum supported R version Elias Projahn 2025-03-04 19:41:35 +01:00
• 03bfb75d99 ui: Switch additional information sections Elias Projahn 2025-02-19 16:45:29 +01:00
• 185beb8068 scripts: Fix here path Elias Projahn 2025-02-16 11:01:10 +01:00
• 785b748ba4 Add drug plots Elias Projahn 2025-02-16 10:36:54 +01:00
• cf8e9e79d5 comparison: Highlight sector 11 Elias Projahn 2025-02-15 10:31:06 +01:00
• e334dc395e Fix navbar color Elias Projahn 2025-02-14 16:08:46 +01:00
• 75dae3b681 Add missing dependencies Elias Projahn 2025-02-14 15:49:57 +01:00
• b845618df2 scripts: Add sliding GSEA for publication Elias Projahn 2024-12-18 13:16:31 +01:00
• 7a21e15c0e scripts: Add normal GSEA Elias Projahn 2024-12-01 17:04:19 +01:00
• 54b3315041 scripts: Fix typo gsea/gtex Elias Projahn 2024-12-01 17:02:46 +01:00
• 7c8cc99d34 scripts: Add background for comparison plot Elias Projahn 2024-11-30 10:20:13 +01:00
• 8358f7e5e7 scripts: Add analysis of drug effects Elias Projahn 2024-11-24 11:01:50 +01:00
• bc5c07a48e scripts: Add new comparison plots Elias Projahn 2024-11-24 11:01:27 +01:00
• 23af4ba644 scripts: Store quadrants in CSV Elias Projahn 2024-11-16 11:05:36 +01:00
• c633d664c1 scripts: Only include datasets in comparison Elias Projahn 2024-10-02 11:32:37 +02:00
• fb975f158b scripts: Add input dataset comparison Elias Projahn 2024-10-02 11:02:22 +02:00
• 765760df33 scripts: Add Venn diagram Elias Projahn 2024-10-02 11:01:58 +02:00
• 1ed42c53aa scripts: Add comparison to other datasets Elias Projahn 2024-09-30 21:15:46 +02:00
• ed796853af scripts: Add gsea_vs_cmap.R Elias Projahn 2024-09-09 10:48:03 +02:00
• bd8a829fe5 Add rankings comparison section Elias Projahn 2024-04-26 20:52:56 +02:00
• 8439066921 Add rankings comparison plot Elias Projahn 2024-04-26 20:52:45 +02:00
• 1503924f80 Fix name spacing in genes table Elias Projahn 2024-04-26 20:29:33 +02:00
• 76980908d7 ranking: Exclude genes without data Elias Projahn 2024-04-26 19:35:23 +02:00
• a9643ca6dc Improve documentation for rank_genes() Elias Projahn 2024-04-26 19:35:05 +02:00
• 7828f9c71e data: Compress using xz Elias Projahn 2024-04-26 18:57:11 +02:00
• 88a2272b1c style: Fix issues with updated Bootstrap Elias Projahn 2024-03-14 19:45:14 +01:00
• 6ef80483d2 Add CMap dataset Elias Projahn 2024-03-14 19:40:25 +01:00
• 375c5b27ba Add sample data to gene selector Elias Projahn 2022-12-16 15:11:29 +01:00
• 673bad39f7 Add API example application Elias Projahn 2022-12-16 15:03:25 +01:00
• 254c43b016 Add screenshots to help page Elias Projahn 2022-12-16 14:26:00 +01:00
• a046ed67c4 Add help page Elias Projahn 2022-12-16 14:10:08 +01:00
• c6116d363c Update overall style Elias Projahn 2022-12-16 11:44:32 +01:00
• 373238b4bc plots: Use branded colors Elias Projahn 2022-12-16 11:31:30 +01:00
• 588bf61673 Fix content styling Elias Projahn 2022-12-15 13:14:34 +01:00
• 78da07e12a Add API documentation Elias Projahn 2022-12-11 21:03:41 +01:00
• 7f70a0c90b Add API using plumber Elias Projahn 2022-12-11 19:08:22 +01:00
• 26a209aade Use two-sided Wilcoxon test Elias Projahn 2022-12-11 18:41:34 +01:00
• 995b31646e Allow setting a custom default dataset Elias Projahn 2022-12-02 15:16:37 +01:00
• c14208c2b2 Add GTEx tissues dataset Elias Projahn 2022-12-01 21:34:07 +01:00
• 510fafeb6e Allow selecting the expression dataset Elias Projahn 2022-12-01 21:23:46 +01:00
• 2f24812c90 Export plot functions Elias Projahn 2022-11-30 15:27:00 +01:00
• a6f0a64c2c Use package's ranking function for included data Elias Projahn 2022-11-30 14:49:42 +01:00
• 698ea5086a Move analysis into the package Elias Projahn 2022-11-30 14:32:40 +01:00
• d25bb424b1 Update precomputed results Elias Projahn 2022-10-07 23:44:16 +02:00
• 670357f01d Change sidebar headings Elias Projahn 2022-10-03 16:06:48 +02:00
• 3829154c1e Use newly computed metrics Elias Projahn 2022-09-25 20:01:42 +02:00
• 76f81ab6a7 Introduce more variation measures Elias Projahn 2022-09-25 19:02:13 +02:00
• 2eec3285f9 Reduce memory footprint during analysis Elias Projahn 2022-09-25 19:01:59 +02:00
• f59a71b16c Use GeTMM normalization Elias Projahn 2022-09-21 18:47:58 +02:00
• c97ee1ca30 Improve gene results tables Elias Projahn 2022-08-22 16:22:17 +02:00
• e621761fd6 Show relative increase in GSEA Elias Projahn 2022-07-22 09:03:13 +02:00
• 22dedfc843 Add link to g:Profiler Elias Projahn 2022-07-22 08:51:05 +02:00
• 015b51e77c Require greater values in alternative hypothesis Elias Projahn 2022-07-18 13:52:14 +02:00
• 3d7c508a83 gsea: Improve smoothing resolution Elias Projahn 2022-07-15 08:57:10 +02:00
• 19b395a564 Reverse axes in distribution plots Elias Projahn 2022-07-13 18:32:26 +02:00
• aed13425ed Include trend line in GSEA plot Elias Projahn 2022-07-02 23:37:13 +02:00
• cc17c13888 Use logarithmic normalization Elias Projahn 2022-07-02 17:52:05 +02:00
• af6b5561e4 Use random sample for more than 100 genes Elias Projahn 2022-07-01 12:37:07 +02:00
• 7f67dec72e Show percentiles in overview plot Elias Projahn 2022-06-22 20:23:48 +02:00
• 1bd5e41c8f Add additional information page Elias Projahn 2022-06-22 19:34:39 +02:00
• 07fea8d6a2 scripts: Add genes script Elias Projahn 2022-06-22 19:10:28 +02:00
• f341031753 ranking: Fix total weight calculation Elias Projahn 2022-06-22 19:09:21 +02:00
• af364b1da8 gsea: Show all sources in plot Elias Projahn 2022-06-22 19:07:15 +02:00
• 4cb08de325 scripts: Add input and analysis script Elias Projahn 2022-06-22 19:06:56 +02:00
• 51c4847949 ui: Move custom css to toplevel div Elias Projahn 2022-06-22 13:57:20 +02:00
• 03516d9cc8 Fix typo in README Elias Projahn 2022-06-22 11:11:03 +00:00
• 27f66d7f35 Add custom genes details table Elias Projahn 2022-06-22 12:39:26 +02:00
• 989655307b gsea: Categorize by GO subsection Elias Projahn 2022-06-22 12:36:14 +02:00
• ba1f9f3a7b Add script for performing a bucket-wise GSEA Elias Projahn 2022-06-15 10:25:11 +02:00
• 8a96a6eca9 Update gene data based on the suggested ranking Elias Projahn 2022-06-15 10:24:10 +02:00
• e290aba9ab Fix details table data selection Elias Projahn 2022-06-14 14:04:39 +02:00
• 2e3521cbd9 Debounce custom gene selection Elias Projahn 2022-06-14 13:50:25 +02:00
• add8a4bd76 Compute and display confidence interval Elias Projahn 2022-06-06 16:15:31 +02:00
• 882891da53 Reintroduce mean expression as metric Elias Projahn 2022-06-06 15:56:34 +02:00
• 0ee713a966 Transform mean and sd expression using log Elias Projahn 2022-06-06 15:48:24 +02:00
• ba9fbdf0df Add readme Elias Projahn 2022-06-02 19:30:31 +02:00
• ef1c3caa04 Use virtualselect from shinyWidgets Elias Projahn 2022-06-02 19:09:13 +02:00
• 90c9d18f26 Add gprofiler integration Elias Projahn 2022-06-02 10:17:49 +02:00
• d1398a10f8 Link to GTEx instead of Ensembl Elias Projahn 2022-06-02 09:23:01 +02:00
• 6fb91e0eff Structure results using tabs Elias Projahn 2022-06-02 09:14:34 +02:00
• 7f69b26a49 Add outputs for custom genes Elias Projahn 2022-05-30 21:59:40 +02:00