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Add screenshots to help page
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inst/content/custom_genes.png
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inst/content/gene_selector.png
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inst/content/gsea.png
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@ -16,6 +16,8 @@ from a dropdown menu. To paste your genes as a whitespace separated list of
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either HGNC symbols or Ensembl gene IDs (in the form `ENSG00000164362`), change
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the top dropdown from "Select from list" to the desired input method.
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## Which information does the tool give for my genes of interest?
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Once your genes have been selected, the user interface will automatically switch
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@ -33,6 +35,8 @@ their top right corner):
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4. A detailed table (downloadable as CSV) including scores, ranks and
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percentiles as well as the computed parameters for your genes.
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## How can I change the parameters of the method?
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The panel on the left side offers multiple controls to change the parameters of
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@ -46,6 +50,8 @@ as well as their weight contributing to that score. These are the criteria:
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| Expression level | The median expression level (logarithmic) is determined for each gene across all samples. Alternatively, it is possible to select the mean expression. | 25% |
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| Expression variation | Measure of the variation of a gene’s expression between samples. By default, the interquartile range (IQR) normalized by the median is used. Other options include the IQR itself, the standard deviation and the coefficient of variation. | -25% |
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## What does the GSEA tab do?
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The "GSEA" tab provides a simple gene set enrichment analysis using
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@ -54,6 +60,8 @@ of over-representation of annotated genes in the top part of the ranking which
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is a way to insinuate the biological or at least scientific relevance of the
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scoring.
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## How can I perform analyses of ubiquity relative to my own expression dataset?
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Because of the computational requirements we can not publicly provide this
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@ -35,4 +35,9 @@ h5 {
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.container th,
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.container td {
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padding: 4px;
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}
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.container img {
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max-width: 100%;
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height: auto;
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}
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