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Interactive web application for analyzing ubiquitously expressed genes https://ubigen.uni-rostock.de
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Elias Projahn cc17c13888 Use logarithmic normalization 
This commit also changes the way the standard deviation and mean
expression are computed in general. Now, samples where the gene is not
expressed at all are excluded before the computation.
2022-07-02 17:52:05 +02:00
data Use logarithmic normalization 2022-07-02 17:52:05 +02:00
man Update gene data based on the suggested ranking 2022-06-15 10:24:10 +02:00
R Use logarithmic normalization 2022-07-02 17:52:05 +02:00
scripts Use logarithmic normalization 2022-07-02 17:52:05 +02:00
.Rbuildignore Add script for performing a bucket-wise GSEA 2022-06-15 10:25:11 +02:00
DESCRIPTION Add readme 2022-06-02 19:30:31 +02:00
LICENSE.md Initial commit 2022-05-07 17:54:23 +02:00
NAMESPACE Update gene data based on the suggested ranking 2022-06-15 10:24:10 +02:00
README.md Fix typo in README 2022-06-22 11:11:03 +00:00

README.md

Ubigen

This R package contains precomputed data including comparisons in gene expression within the GTEx database. It provides a graphical interface to analyze and visualize those data to rank genes based on how ubiquitously expressed they are.

Installation

You can install the development version of ubigen using:

# install.packages("remotes")
remotes::install_git("https://code.johrpan.de/johrpan/ubigen.git")

Usage

You only need one function to get started. It will run the application and serve the graphical user interface which can be viewed using your preferred web browser.

ubigen::run_app()

For additional information, take a look at the built-in documentation (?ubigen::run_app).

License

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.