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e19f154ab5
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Update data to Ensembl 110
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2023-09-27 13:11:08 +02:00 |
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b4fb39f8de
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Require R 4.1
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2023-09-27 12:57:45 +02:00 |
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8cf63d26f6
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Add link to geposanui
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2022-11-28 15:57:13 +01:00 |
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2b859b55dd
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adjacency: Combine reference genes first
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2022-08-18 19:22:21 +02:00 |
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8cde59c1c7
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clustering: Increase default cluster span
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2022-08-18 19:22:21 +02:00 |
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ba55aa124e
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plots: Rotate and simplify boxplot
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2022-08-18 19:22:21 +02:00 |
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c8b94fade8
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plots: Improve hoverinfo in correlation plot
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2022-08-18 19:22:21 +02:00 |
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0440d5931c
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plots: Fix colors in scores by position plot
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2022-08-18 19:22:21 +02:00 |
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aee77e8bb5
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distance: Switch from median to density estimate
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2022-08-18 19:22:21 +02:00 |
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98ee52b122
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plots: Add rankings correlation plot
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2022-08-18 19:22:21 +02:00 |
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60dc05f6c6
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Namespace all method IDs
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2022-08-18 19:22:21 +02:00 |
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038208bfbd
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Implement random forest model method
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2022-08-18 19:22:21 +02:00 |
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6cc9196a0d
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Rename method proximity to distance
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2022-08-18 19:22:21 +02:00 |
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0f53c3e798
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Rename method proximity to distance
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2022-08-18 19:22:21 +02:00 |
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463faf0fbe
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plots: Replace max rank with percentile lines
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2022-08-18 19:22:21 +02:00 |
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8812c9579f
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Add ORCID to description
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2022-06-28 13:57:07 +02:00 |
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260705785a
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clusteriness: Remove n_clusters and relation
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2022-06-28 13:31:36 +02:00 |
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0ae6836d86
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Remove species adjacency method
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2022-06-28 13:06:59 +02:00 |
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ab545a415c
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clustering: Expose clusteriness parameters
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2022-06-22 13:40:00 +02:00 |
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c6ca93b009
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Allow customizing method metadata
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2022-06-22 13:40:00 +02:00 |
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0e4f4621ed
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Allow to set relation for cluster size
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2022-06-22 13:40:00 +02:00 |
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fddd0c3fa0
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Fix preset bug when filtering species
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2022-06-22 13:40:00 +02:00 |
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2529f35660
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Allow to limit number of clusters for clusteriness
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2022-06-22 13:40:00 +02:00 |
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3df4ec5d89
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compare: Include confidence intervals
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2022-06-03 17:41:45 +02:00 |
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3217c9bd29
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preset: Filter species in addition to genes
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2022-05-30 13:49:52 +02:00 |
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9e96c54f23
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plots: Decrease marker size for input data plot
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2022-05-28 17:11:53 +02:00 |
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abf78f27d3
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plots: Sort species in input data plot
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2022-05-28 17:01:31 +02:00 |
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d144f490a0
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plots: Switch axes of input data plot
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2022-05-28 16:15:33 +02:00 |
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49981300fb
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neural: Refactor and increase gene requirement
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2022-05-26 19:50:23 +02:00 |
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c04b6337e9
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Reindent code to use just two spaces
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2022-05-26 12:42:19 +02:00 |
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a1e6147466
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Add option to show all chromosomes in positions plot
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2022-05-23 11:40:28 +02:00 |
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d83dfa0574
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Fix and enhance hover info in plots
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2022-05-20 10:12:47 +02:00 |
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b17eb049d1
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Add hover information to positions plot
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2022-05-19 17:09:19 +02:00 |
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e41d02c659
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Implement gene set highlighting in positions plot
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2022-05-18 17:29:35 +02:00 |
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7e53015168
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Add chromosomal positions plot
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2022-05-17 21:48:30 +02:00 |
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9590babb1a
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Add some missing import qualifiers
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2022-05-12 18:43:25 +02:00 |
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5bfd20b6b6
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Update to Ensembl 106
This also introduces some additional columns to the stored data tables.
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2022-04-22 13:21:54 +02:00 |
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2427e8c0c0
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plots: Unify colors
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2022-03-01 15:49:04 +01:00 |
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2fb48be0e3
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proximity: Use median distance by default
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2022-02-24 17:44:04 +01:00 |
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99bc6794b9
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Revert "proximity: Remove method"
This reverts commit ac9894e988.
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2022-02-24 17:39:44 +01:00 |
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54e3b433f7
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analyze: Allow to exclude detailed results
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2022-02-24 15:57:27 +01:00 |
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074902b505
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Use median by default in adjacency methods
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2022-02-24 15:36:07 +01:00 |
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33cc33f81a
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ranking: Remove caching for optimization
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2022-02-24 14:51:15 +01:00 |
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57fc119993
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preset: Fix documentation cross-reference
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2022-02-24 14:43:41 +01:00 |
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7fe07aceec
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correlation: Make summary function customizable
This commit also changes the default behavior to using
`stats::median()`.
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2022-02-24 14:43:41 +01:00 |
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3cedc4fea4
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validate: Update and extend
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2022-01-26 11:38:39 +01:00 |
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016a9ada9d
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comparison: Add more useful information
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2022-01-26 10:56:35 +01:00 |
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c633b17db6
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Rename method source files
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2022-01-26 09:59:44 +01:00 |
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ab61f08d0d
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preset: Filter reference genes and add warnings
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2022-01-19 11:18:27 +01:00 |
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53f955f3da
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Add species adjacency method
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2022-01-19 11:18:27 +01:00 |
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