510fafeb6e
Allow selecting the expression dataset
2022-12-01 21:23:46 +01:00
a6f0a64c2c
Use package's ranking function for included data
2022-11-30 14:49:42 +01:00
698ea5086a
Move analysis into the package
2022-11-30 14:32:40 +01:00
3829154c1e
Use newly computed metrics
2022-10-07 23:14:29 +02:00
76f81ab6a7
Introduce more variation measures
2022-10-07 23:14:29 +02:00
2eec3285f9
Reduce memory footprint during analysis
2022-10-07 23:14:29 +02:00
f59a71b16c
Use GeTMM normalization
2022-10-07 23:14:29 +02:00
3d7c508a83
gsea: Improve smoothing resolution
2022-07-15 08:57:10 +02:00
aed13425ed
Include trend line in GSEA plot
2022-07-02 23:37:13 +02:00
cc17c13888
Use logarithmic normalization
...
This commit also changes the way the standard deviation and mean
expression are computed in general. Now, samples where the gene is not
expressed at all are excluded before the computation.
2022-07-02 17:52:05 +02:00
1bd5e41c8f
Add additional information page
2022-06-22 19:34:39 +02:00
07fea8d6a2
scripts: Add genes script
2022-06-22 19:10:28 +02:00
af364b1da8
gsea: Show all sources in plot
2022-06-22 19:07:15 +02:00
4cb08de325
scripts: Add input and analysis script
2022-06-22 19:06:56 +02:00
989655307b
gsea: Categorize by GO subsection
2022-06-22 12:36:14 +02:00
ba1f9f3a7b
Add script for performing a bucket-wise GSEA
2022-06-15 10:25:11 +02:00
