0d2e871151
scripts: Rename "Venn" to "Venn 88"
2025-04-25 17:27:35 +02:00
185beb8068
scripts: Fix here path
2025-02-16 11:01:10 +01:00
785b748ba4
Add drug plots
2025-02-16 10:36:54 +01:00
cf8e9e79d5
comparison: Highlight sector 11
2025-02-15 10:31:06 +01:00
b845618df2
scripts: Add sliding GSEA for publication
2024-12-18 13:16:31 +01:00
7a21e15c0e
scripts: Add normal GSEA
2024-12-01 17:04:19 +01:00
54b3315041
scripts: Fix typo gsea/gtex
2024-12-01 17:02:46 +01:00
7c8cc99d34
scripts: Add background for comparison plot
2024-11-30 10:20:13 +01:00
8358f7e5e7
scripts: Add analysis of drug effects
2024-11-24 11:01:50 +01:00
bc5c07a48e
scripts: Add new comparison plots
2024-11-24 11:01:27 +01:00
23af4ba644
scripts: Store quadrants in CSV
2024-11-16 11:05:36 +01:00
c633d664c1
scripts: Only include datasets in comparison
2024-10-02 11:32:37 +02:00
fb975f158b
scripts: Add input dataset comparison
2024-10-02 11:02:22 +02:00
765760df33
scripts: Add Venn diagram
2024-10-02 11:01:58 +02:00
1ed42c53aa
scripts: Add comparison to other datasets
2024-09-30 21:15:46 +02:00
ed796853af
scripts: Add gsea_vs_cmap.R
2024-09-09 10:48:03 +02:00
6ef80483d2
Add CMap dataset
2024-03-14 19:40:25 +01:00
673bad39f7
Add API example application
2022-12-16 15:03:25 +01:00
c14208c2b2
Add GTEx tissues dataset
2022-12-01 21:34:07 +01:00
510fafeb6e
Allow selecting the expression dataset
2022-12-01 21:23:46 +01:00
a6f0a64c2c
Use package's ranking function for included data
2022-11-30 14:49:42 +01:00
698ea5086a
Move analysis into the package
2022-11-30 14:32:40 +01:00
3829154c1e
Use newly computed metrics
2022-10-07 23:14:29 +02:00
76f81ab6a7
Introduce more variation measures
2022-10-07 23:14:29 +02:00
2eec3285f9
Reduce memory footprint during analysis
2022-10-07 23:14:29 +02:00
f59a71b16c
Use GeTMM normalization
2022-10-07 23:14:29 +02:00
3d7c508a83
gsea: Improve smoothing resolution
2022-07-15 08:57:10 +02:00
aed13425ed
Include trend line in GSEA plot
2022-07-02 23:37:13 +02:00
cc17c13888
Use logarithmic normalization
...
This commit also changes the way the standard deviation and mean
expression are computed in general. Now, samples where the gene is not
expressed at all are excluded before the computation.
2022-07-02 17:52:05 +02:00
1bd5e41c8f
Add additional information page
2022-06-22 19:34:39 +02:00
07fea8d6a2
scripts: Add genes script
2022-06-22 19:10:28 +02:00
af364b1da8
gsea: Show all sources in plot
2022-06-22 19:07:15 +02:00
4cb08de325
scripts: Add input and analysis script
2022-06-22 19:06:56 +02:00
989655307b
gsea: Categorize by GO subsection
2022-06-22 12:36:14 +02:00
ba1f9f3a7b
Add script for performing a bucket-wise GSEA
2022-06-15 10:25:11 +02:00
