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2ceda0691b
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adjacency: Make distance estimation customizable
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2022-01-09 20:21:27 +01:00 |
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ac9894e988
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proximity: Remove method
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2022-01-09 19:54:05 +01:00 |
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910bf85719
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clustering: Reduce default span to 100,000
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2022-01-09 19:54:05 +01:00 |
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a0dce372b6
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ranking: Compute percentiles
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2022-01-09 19:54:05 +01:00 |
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e2b93babe5
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Restructure classes and their responsibilities
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2022-01-09 19:54:05 +01:00 |
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01ec301d6d
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data: Remove absolute positions
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2022-01-04 14:58:49 +01:00 |
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35fb5e3884
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Add cross-validation function
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2022-01-04 14:58:49 +01:00 |
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a347bf0ad4
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plots: Refactor and improve
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2021-12-02 17:23:18 +01:00 |
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f997b5fdd7
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plots: Add rankings plot
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2021-12-02 15:28:03 +01:00 |
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f2bc4318a2
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Fix some package issues
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2021-11-23 09:42:21 +01:00 |
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255123c74f
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Regenerate documentation
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2021-11-22 14:10:22 +01:00 |
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5a58f457a4
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analyze: Add optimization
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2021-11-19 15:07:15 +01:00 |
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de1c1ed40e
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preset: Remove min_n_species customization
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2021-11-18 14:03:11 +01:00 |
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33056bfa40
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Move species count to analysis
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2021-11-18 14:03:11 +01:00 |
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e28bcaafed
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plots: Add position plot
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2021-11-15 15:12:13 +01:00 |
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19bae34a96
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plots: Add max_rank to score plot
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2021-11-15 09:21:37 +01:00 |
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4dda7fa49e
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ranking: Filter out species with too few species
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2021-11-12 10:25:07 +01:00 |
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910eb06fe9
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analyze: Include preset in result
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2021-11-12 10:16:11 +01:00 |
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6d9511fa2e
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Fix some package issues
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2021-11-06 13:22:57 +01:00 |
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28f9834984
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plots: Move rank plot and add boxplot
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2021-11-06 13:03:36 +01:00 |
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d075380559
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ranking: Add plot method
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2021-11-05 23:05:40 +01:00 |
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f98800f1e0
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Add comparison feature
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2021-11-05 19:08:50 +01:00 |
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4992bb2930
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ranking: Use S3 classes and rename optimize method
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2021-11-05 14:47:33 +01:00 |
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55958e0d85
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preset: Turn into S3 class
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2021-11-03 14:17:39 +01:00 |
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c0a1d965d7
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Add more optimization targets
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2021-10-21 11:42:44 +02:00 |
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064f75ddae
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data: Remove n_species from genes
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2021-10-21 11:42:16 +02:00 |
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37f468658c
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Add framework for progress information
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2021-10-19 15:03:10 +02:00 |
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c52d42c2b6
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Initial commit
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2021-10-19 13:39:55 +02:00 |
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