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plots: Move rank plot and add boxplot

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This commit is contained in:
Elias Projahn 2021-11-06 13:03:36 +01:00
parent d075380559
commit 28f9834984
6 changed files with 143 additions and 77 deletions
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20
man/plot.geposan_ranking.Rd
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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/ranking.R
\name{plot.geposan_ranking}
\alias{plot.geposan_ranking}
\title{S3 method for plotting a ranking.}
\usage{
\method{plot}{geposan_ranking}(ranking, gene_sets = NULL, labels = NULL)
}
\arguments{
\item{gene_sets}{A list of gene sets (containing vectors of gene IDs) that
will be highlighted in the plot.}
\item{labels}{Labels for the gene sets.}
}
\description{
S3 method for plotting a ranking.
}
\seealso{
ranking()
}

23
man/plot_boxplot.Rd Normal file
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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/plots.R
\name{plot_boxplot}
\alias{plot_boxplot}
\title{Visualize a ranking by comparing gene sets in a boxplot.}
\usage{
plot_boxplot(ranking, gene_sets = NULL, labels = NULL)
}
\arguments{
\item{ranking}{The ranking to visualize.}
\item{gene_sets}{A list of gene sets (containing vectors of gene IDs) that
will be shown as separate boxes.}
\item{labels}{Labels for the gene sets. This is required if gene sets are
given and has to have the same length.}
}
\description{
This function requires the package \code{plotly}.
}
\seealso{
ranking()
}

23
man/plot_scores.Rd Normal file
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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/plots.R
\name{plot_scores}
\alias{plot_scores}
\title{Plot a ranking as a scatter plot of scores.}
\usage{
plot_scores(ranking, gene_sets = NULL, labels = NULL)
}
\arguments{
\item{ranking}{The ranking to visualize.}
\item{gene_sets}{A list of gene sets (containing vectors of gene IDs) that
will be highlighted in the plot.}
\item{labels}{Labels for the gene sets. This is required if gene sets are
given and has to have the same length.}
}
\description{
This function requires the package \code{plotly}.
}
\seealso{
ranking()
}