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Show relative increase in GSEA

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This commit is contained in:
Elias Projahn 2022-07-22 09:03:13 +02:00
parent 22dedfc843
commit e621761fd6
1 changed files with 7 additions and 1 deletions
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8
R/server.R
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@ -134,12 +134,14 @@ server <- function(input, output, session) {
data[, total_ratio := term_size / effective_domain_size] data[, total_ratio := term_size / effective_domain_size]
data[, query_ratio := intersection_size / query_size] data[, query_ratio := intersection_size / query_size]
data[, increase := (query_ratio - total_ratio) / total_ratio]
data <- data[, .( data <- data[, .(
source, source,
term_name, term_name,
total_ratio, total_ratio,
query_ratio, query_ratio,
increase,
p_value p_value
)] )]
@ -151,6 +153,7 @@ server <- function(input, output, session) {
"Term", "Term",
"Total ratio", "Total ratio",
"Query ratio", "Query ratio",
"Increase",
"p-value" "p-value"
), ),
options = list( options = list(
@ -158,7 +161,10 @@ server <- function(input, output, session) {
) )
) |> ) |>
DT::formatRound("p_value", digits = 4) |> DT::formatRound("p_value", digits = 4) |>
DT::formatPercentage(c("total_ratio", "query_ratio"), digits = 1) DT::formatPercentage(
c("total_ratio", "query_ratio", "increase"),
digits = 2
)
}) })
output$gsea_plot_ranking <- plotly::renderPlotly(gsea_plot_ranking) output$gsea_plot_ranking <- plotly::renderPlotly(gsea_plot_ranking)