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527ba01cc9
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Add rank plot
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2021-10-15 13:16:51 +02:00 |
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114193506b
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Port scatter plot to plotly
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2021-10-15 12:24:28 +02:00 |
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fcd9b4ee05
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Rearrange user interface
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2021-10-15 11:46:15 +02:00 |
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7b9a42215e
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Add new method proximity
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2021-10-15 09:27:35 +02:00 |
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9b0b3c13f5
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Generalize method definitions
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2021-10-15 09:26:57 +02:00 |
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d3edeefbe2
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Only retrieve assembled chromosomes
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2021-10-11 15:10:03 +02:00 |
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c26e4ff4a3
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Add option to penalize missing values
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2021-10-11 11:14:08 +02:00 |
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4222a08b87
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Add slider to set required number of species
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2021-10-11 11:08:50 +02:00 |
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48aa46c2c4
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input: Only connect to Ensembl if necessary
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2021-10-11 10:17:58 +02:00 |
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d87474e574
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Update correlation method
This adds some performance optimizations and removes the penalty for
missing values.
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2021-10-11 10:10:28 +02:00 |
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cd63486f0a
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clusteriness: Don't penalize missing values yet
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2021-10-11 09:48:48 +02:00 |
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b122f2e240
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Optimize clustering for speed
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2021-10-09 14:22:28 +02:00 |
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ae0643741a
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Add buttons to copy results
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2021-10-07 12:59:04 +02:00 |
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686af3f44b
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Disable gost by default
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2021-10-07 12:42:36 +02:00 |
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f002758fc8
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Add gene set enrichment analysis
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2021-10-07 12:18:47 +02:00 |
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d73908acab
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Optimize ranking weights
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2021-10-07 11:31:45 +02:00 |
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0aa88119d2
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Add experimental neural network
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2021-10-05 18:30:12 +02:00 |
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397b8d0ba2
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Base clusteriness on species count
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2021-10-04 09:19:38 +02:00 |
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8b727a0329
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Add links to Ensembl for genes
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2021-10-01 09:50:04 +02:00 |
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8fc743fe10
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Display score and add cut-off filter
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2021-09-30 13:25:39 +02:00 |
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91c15045cf
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Add new clusteriness score
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2021-09-30 12:54:40 +02:00 |
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ba7c624705
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Enhance progress information
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2021-09-21 16:47:13 +02:00 |
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8e54dacd3d
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Order data before correlating
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2021-09-19 20:19:20 +02:00 |
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e9c05fdbab
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Reinclude human into distance data
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2021-09-19 12:07:59 +02:00 |
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22b25c9b83
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Fix cluster length slider
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2021-09-19 09:57:27 +02:00 |
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03be4bfe5d
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Add weighted ranking
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2021-09-18 23:33:37 +02:00 |
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9d6b2e4d50
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Add new correlation method
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2021-09-18 23:10:52 +02:00 |
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1cea6c3631
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Retrieve input data using biomaRt
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2021-09-16 00:06:54 +02:00 |
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040aabc610
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Relayout user interface
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2021-08-29 15:53:31 +02:00 |
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7b06f626b9
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Add synopsis of results
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2021-08-29 15:29:34 +02:00 |
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437ae6de84
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Include data on TPE-OLD status of genes
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2021-08-29 14:02:37 +02:00 |
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42d8da7e77
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Add scrolling to output
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2021-08-29 13:43:14 +02:00 |
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3fd8ef6269
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Allow using all species for processing
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2021-08-29 13:25:12 +02:00 |
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b69b3e9d2d
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Always use the largest cluster
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2021-08-26 14:37:17 +02:00 |
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1c88458ce7
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Fix minor issues
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2021-08-26 12:51:43 +02:00 |
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363dee2cbd
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Enhance scatter plot
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2021-08-26 12:50:03 +02:00 |
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1c43433600
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Add basic filters to the UI
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2021-08-26 11:20:50 +02:00 |
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d3151957a3
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Add initial gene processing
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2021-08-25 15:01:18 +02:00 |
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fd72b3426c
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Rename data to input
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2021-08-25 12:03:11 +02:00 |
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129793e055
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Include all species
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2021-08-25 12:00:22 +02:00 |
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abab22a907
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Add a generic caching function
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2021-08-25 11:59:27 +02:00 |
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400ca776e0
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Simplify data format and correct scale labels
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2021-08-16 17:21:01 +02:00 |
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495524a0ac
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plot: Remove old plotting code
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2021-06-28 16:36:53 +02:00 |
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5d59018b2e
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Start adding an UI using Shiny
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2021-06-24 22:38:16 +02:00 |
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be696b91a0
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input: Remove cache from index
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2021-06-24 22:36:46 +02:00 |
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a50feafcca
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data: Revert to using data.table
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2021-06-24 22:36:02 +02:00 |
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998009b418
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data: Simplify data structure
This commit also adds the input data to the index.
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2021-06-24 20:20:46 +02:00 |
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914673c79c
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data: Migrate to tidyverse
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2021-06-21 13:03:26 +02:00 |
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cbc444f20c
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Initial commit
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2021-06-16 22:01:09 +02:00 |
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