geposanui

johrpan/geposanui

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7b0b8bc8c1 Version 1.1.0 main v1.1.0 Elias Projahn 2025-02-23 16:06:12 +01:00
7d615f1a9a Add comparison gene results to overview Elias Projahn 2025-02-23 15:51:45 +01:00
b3b492172a Add warnings for excluded comparison genes Elias Projahn 2025-02-23 15:51:30 +01:00
e0694b71d0 Fix navbar color Elias Projahn 2025-02-14 16:08:13 +01:00
2464240d99 Fix typo in footer Elias Projahn 2024-04-26 19:15:44 +02:00
e40b2151fe Update link to README Elias Projahn 2024-04-25 22:29:33 +02:00
6a7ae42c1c Version 1.0.1 v1.0.1 Elias Projahn 2024-04-25 22:09:33 +02:00
545dd275ab Add citation Elias Projahn 2024-04-25 22:09:25 +02:00
89ee4e5377 Release 1.0.0 v1.0.0 Elias Projahn 2024-03-28 21:05:47 +01:00
9e95f8bbfb Add help page and separate stylesheet Elias Projahn 2024-02-18 18:03:55 +01:00
a3fc56d17e results: Add some information labels Elias Projahn 2024-02-18 15:11:46 +01:00
d23646e0a9 Add more context help Elias Projahn 2024-02-18 14:29:23 +01:00
a2f3ea4448 preset editor: Display error and warning messages Elias Projahn 2024-02-13 16:53:58 +01:00
21b28bf1e8 gene selector: Fix bug in condition Elias Projahn 2024-02-13 16:53:11 +01:00
2ebb55fac6 First outline of a documentation. Steffen Moeller 2024-02-12 18:14:28 +01:00
64c616ec05 methods: Add help popover Elias Projahn 2024-01-31 12:20:07 +01:00
e0e92e0fcc Update custom styles Elias Projahn 2024-01-31 11:17:25 +01:00
b0d3d9fe50 results: Adapt to changes in geposan Elias Projahn 2023-11-11 16:16:53 +01:00
1dc6315e78 results: Add new chromosome overview plot Elias Projahn 2023-11-11 09:51:31 +01:00
e2ba8586c4 Require R 4.1 Elias Projahn 2023-09-27 13:00:49 +02:00
f9fcb16130 results: Show method correlation coefficient Elias Projahn 2022-08-30 10:26:40 +02:00
f0a8bce297 gsea: Properly show empty results Elias Projahn 2022-08-30 10:13:28 +02:00
49d5a3f281 gsea: Add link to g:Profiler Elias Projahn 2022-08-22 15:48:25 +02:00
6938cb0d84 User interface and style improvements Elias Projahn 2022-08-18 12:21:00 +02:00
447fdfab4f Move filtering to tabs that use it Elias Projahn 2022-08-18 11:09:22 +02:00
9fb6ca428e gsea: Move to separate module Elias Projahn 2022-08-18 10:00:05 +02:00
045d4dd6ad details: Improve download and table Elias Projahn 2022-08-18 09:54:59 +02:00
d61fc157f4 Make preset methods configurable Elias Projahn 2022-08-18 09:21:48 +02:00
e9033883a5 Separate reference and comparison gene sets Elias Projahn 2022-08-18 09:02:53 +02:00
7f0090620b Move results page to separate module Elias Projahn 2022-08-17 17:09:38 +02:00
bd3446716b Rename results module to details Elias Projahn 2022-08-17 16:46:39 +02:00
170a92dd56 Allow showing all genes in correlation plot Elias Projahn 2022-08-17 16:17:58 +02:00
4e31d4ef79 Add rankings correlation plot Elias Projahn 2022-08-14 18:04:40 +02:00
c78802425c Add positions plot to results page Elias Projahn 2022-08-04 11:54:52 +02:00
c2328c0847 Use correct background and show increase for GSEA Elias Projahn 2022-07-22 09:35:24 +02:00
12129ac65a Remove max rank from scores plot Elias Projahn 2022-07-22 09:26:43 +02:00
eed1cbe86b Temporarily remove DisGeNET integration Elias Projahn 2022-07-01 12:40:54 +02:00
b5ca619a0d Supply custom background for enrichment Elias Projahn 2022-07-01 12:38:46 +02:00
04ab4f4a82 Separate reference and comparison gene sets dynamic-methods Elias Projahn 2022-08-18 09:02:53 +02:00
4e0eb523ea methods: Adapt to preset methods dynamically Elias Projahn 2022-08-18 08:52:37 +02:00
d325486d95 results: Adapt to preset methods Elias Projahn 2022-08-17 18:03:52 +02:00
bb15771f22 details: Adapt to methods dynamically Elias Projahn 2022-08-17 17:44:33 +02:00
1938b7e0d1 Move results page to separate module Elias Projahn 2022-08-17 17:09:38 +02:00
da6bae70a9 Rename results module to details Elias Projahn 2022-08-17 16:46:39 +02:00
5bf3aa8a4a Use new optimization target names Elias Projahn 2022-08-17 16:18:25 +02:00
d47eb29ec1 Allow showing all genes in correlation plot Elias Projahn 2022-08-17 16:17:58 +02:00
684bffe94f Add rankings correlation plot Elias Projahn 2022-08-14 18:04:40 +02:00
30237d9e06 Add positions plot to results page Elias Projahn 2022-08-04 11:54:52 +02:00
7428b8b93b Use correct background and show increase for GSEA Elias Projahn 2022-07-22 09:35:24 +02:00
c7ea8fd1c5 Remove max rank from scores plot Elias Projahn 2022-07-22 09:26:43 +02:00
9a20abd69b Temporarily remove DisGeNET integration Elias Projahn 2022-07-01 12:40:54 +02:00
6db14c4d4a Supply custom background for enrichment Elias Projahn 2022-07-01 12:38:46 +02:00
a3164ece43 Use new default optimization target Elias Projahn 2022-06-29 18:51:40 +02:00
4378e87b2a Make custom genes default in comparison editor Elias Projahn 2022-06-22 13:55:47 +02:00
e7cbb4ea33 Move comparison editor to results page Elias Projahn 2022-06-22 13:48:37 +02:00
9960379645 Show confidence intervals for comparison Elias Projahn 2022-06-03 17:56:14 +02:00
b026d8e079 Use virtualselect from shinyWidgets Elias Projahn 2022-06-02 19:08:01 +02:00
c7ccaa657b filters: Allow filter ranges for percentiles etc Elias Projahn 2022-05-30 14:21:49 +02:00
a00d038361 Sort species in input data plot Elias Projahn 2022-05-28 17:12:44 +02:00
421bb79a0b Remove global methods data Elias Projahn 2022-05-26 17:55:40 +02:00
13b5efc1e3 Reindent code to use just two spaces Elias Projahn 2022-05-26 12:44:09 +02:00
47b8d7a1f0 Show all chromosomes in position plot by default Elias Projahn 2022-05-23 11:39:30 +02:00
17b738378a Show distances in results and add filtering Elias Projahn 2022-05-23 11:24:49 +02:00
507f90e084 Add comparison text Elias Projahn 2022-05-22 15:17:02 +02:00
cf642242ce Hide messages from disgenet2r Elias Projahn 2022-05-22 14:11:02 +02:00
717b3eb789 Don't use DT's bootstrap theme Elias Projahn 2022-05-22 14:08:58 +02:00
f6420eaf3f Rename to geposanui and update README Elias Projahn 2022-05-20 09:38:26 +02:00
8f6ebc290f Allow changing the application title Elias Projahn 2022-05-19 16:28:59 +02:00
74d7865389 Add options to configure default gene sets Elias Projahn 2022-05-19 16:24:23 +02:00
22f5e86625 Show gene sets in positions plot Elias Projahn 2022-05-18 17:33:11 +02:00
6a5e5ed9c6 Add chromosomal positions plot Elias Projahn 2022-05-17 21:58:40 +02:00
40164ebf84 server: Cache analysis transiently Elias Projahn 2022-02-24 15:58:24 +01:00
0ca4063429 methods: Cache optimization transiently Elias Projahn 2022-02-24 15:04:04 +01:00
e61546b53c Add separate gene selector component Elias Projahn 2022-01-26 14:48:29 +01:00
95efb731bf preset_editor: Set default custom reference genes Elias Projahn 2022-01-25 16:28:59 +01:00
2ced93aa94 Switch to the results page when the preset changes Elias Projahn 2022-01-25 16:27:18 +01:00
2faaeb869a methods: Allow to optimize for comparison genes Elias Projahn 2022-01-25 13:05:04 +01:00
11c125465d Refactor input page and handle preset errors Elias Projahn 2022-01-23 19:46:17 +01:00
aa4c655c53 preset_editor: Don't produce invalid presets Elias Projahn 2022-01-20 11:04:49 +01:00
8a9ae63350 data: Remove redundant species table Elias Projahn 2022-01-17 20:42:27 +01:00
bcd2a615b1 Adapt to geposan preset changes Elias Projahn 2022-01-17 20:36:34 +01:00
f1b78d0081 filters: Increase rank granularity Elias Projahn 2022-01-17 20:27:28 +01:00
04b615bb7c server: Generate rankings plot from preset Elias Projahn 2022-01-13 13:37:02 +01:00
41e5e40178 Update installation instructions Elias Projahn 2022-01-08 20:06:30 +01:00
c8e1e311dc results: Add download button Elias Projahn 2021-12-30 12:29:21 +01:00
7834360e2a results: Move to separate module Elias Projahn 2021-12-30 12:19:00 +01:00
b6e9179f13 server: Show percentiles in results table Elias Projahn 2021-12-30 11:54:39 +01:00
471f2773aa methods: Automatically change to custom weighting Elias Projahn 2021-12-17 13:14:42 +01:00
2bf96ffd38 Adapt to changes in geposan Elias Projahn 2021-12-16 13:52:14 +01:00
f1337f0331 filters: Add default filter based on percentile Elias Projahn 2021-12-15 13:00:21 +01:00
663128271e Allow manually entering genes Elias Projahn 2021-12-15 12:41:35 +01:00
7bef0f3bda ui: Use bootstrap version 5 Elias Projahn 2021-12-15 12:41:12 +01:00
2041cf2c2c Add DisGeNET integration Elias Projahn 2021-12-08 14:49:50 +01:00
36546570e0 Update gprofiler integration Elias Projahn 2021-12-08 14:38:38 +01:00
ffa90cd667 Further simplify results section Elias Projahn 2021-12-08 14:11:39 +01:00
f318cde5e7 Update UI with navbar and selectize Elias Projahn 2021-12-08 13:46:59 +01:00
b6e1bc6603 Add rankings plot Elias Projahn 2021-12-06 14:24:31 +01:00
1871c3b870 Add comparison genes Elias Projahn 2021-12-06 13:54:22 +01:00
48c903f8c7 Update plots Elias Projahn 2021-12-02 17:22:27 +01:00
42b2254a1e Add new method adjacency Elias Projahn 2021-11-25 21:10:39 +01:00