Commit graph

Select branches

Hide pull requests

centromeres

main

v1.0.0

v1.0.1

v1.1.0

Mono Color

• 88b1a9ab6a Add new method adjacency Elias Projahn 2021-11-25 20:55:11 +01:00
• b1eff374b3 Relicense to AGPL Elias Projahn 2021-11-25 11:16:07 +01:00
• c0e2dfced2 neural: Validate models and store training data Elias Projahn 2021-11-23 16:26:04 +01:00
• 7c87788cad neural: Use tensorflow seed Elias Projahn 2021-11-23 11:08:21 +01:00
• 51e7176a1a Store more method results Elias Projahn 2021-11-23 09:56:02 +01:00
• f2bc4318a2 Fix some package issues Elias Projahn 2021-11-23 09:42:21 +01:00
• 599f09a52f Remove position analysis Elias Projahn 2021-11-22 15:16:05 +01:00
• 255123c74f Regenerate documentation Elias Projahn 2021-11-22 14:10:22 +01:00
• 2f3dc80a2f plots: Add chromosome plot Elias Projahn 2021-11-22 14:10:08 +01:00
• 1058dfaa17 neural: Add progress information Elias Projahn 2021-11-22 13:32:50 +01:00
• 7d3bedb436 ranking: Add optimization for median Elias Projahn 2021-11-21 23:56:15 +01:00
• 61422a6a06 neural: Reimplement merging positions and distances Elias Projahn 2021-11-21 23:55:56 +01:00
• 5a58f457a4 analyze: Add optimization Elias Projahn 2021-11-19 15:07:15 +01:00
• b018838d37 analysis: Cache the analysis object itself Elias Projahn 2021-11-18 15:18:07 +01:00
• de1c1ed40e preset: Remove min_n_species customization Elias Projahn 2021-11-18 12:30:19 +01:00
• 33056bfa40 Move species count to analysis Elias Projahn 2021-11-17 22:57:31 +01:00
• f84d37dd30 neural: Readd distances as input data Elias Projahn 2021-11-16 16:23:03 +01:00
• 88d6837fee ranking: Allow negative weights Elias Projahn 2021-11-16 16:22:36 +01:00
• 47a26da94a neural: Exclude genes from training for themselves Elias Projahn 2021-11-16 12:18:03 +01:00
• e28bcaafed plots: Add position plot Elias Projahn 2021-11-15 15:12:13 +01:00
• 19bae34a96 plots: Add max_rank to score plot Elias Projahn 2021-11-15 09:21:37 +01:00
• 1af138bf6f neural: Always use position data Elias Projahn 2021-11-14 19:27:11 +01:00
• 4b1ab9fc9a correlation: Fix data preparation Elias Projahn 2021-11-14 17:49:16 +01:00
• 7bd63aa6d3 proximity: Remove use_positions Elias Projahn 2021-11-14 17:21:39 +01:00
• cfc5e7a6bf Implement all methods using positions additionally Elias Projahn 2021-11-05 19:49:54 +01:00
• 9cbc127177 Fix some analysis bugs Elias Projahn 2021-11-12 18:22:22 +01:00
• 0e641e4dd2 ranking: Fix error copying the input Elias Projahn 2021-11-12 10:33:33 +01:00
• 4dda7fa49e ranking: Filter out species with too few species Elias Projahn 2021-11-12 10:25:07 +01:00
• 910eb06fe9 analyze: Include preset in result Elias Projahn 2021-11-12 10:16:11 +01:00
• 6d9511fa2e Fix some package issues Elias Projahn 2021-11-06 13:22:57 +01:00
• 28f9834984 plots: Move rank plot and add boxplot Elias Projahn 2021-11-06 13:03:36 +01:00
• d075380559 ranking: Add plot method Elias Projahn 2021-11-05 23:05:40 +01:00
• f98800f1e0 Add comparison feature Elias Projahn 2021-11-05 19:08:50 +01:00
• 4992bb2930 ranking: Use S3 classes and rename optimize method Elias Projahn 2021-11-05 14:47:33 +01:00
• 4792bbaefd analyze: Turn analysis into S3 class Elias Projahn 2021-11-05 14:33:39 +01:00
• 55958e0d85 preset: Turn into S3 class Elias Projahn 2021-11-03 14:17:39 +01:00
• 6494ae8200 data: Include more chromosomes Elias Projahn 2021-11-02 11:00:37 +01:00
• df6e23d219 Handle caching Elias Projahn 2021-10-21 17:25:44 +02:00
• b8365e0efb Sort preset values to get predictable hashes Elias Projahn 2021-10-21 16:30:26 +02:00
• 7f2847423c ranking: Clamp weights to 0.0 Elias Projahn 2021-10-21 16:21:55 +02:00
• 21a5817988 Properly access distance data Elias Projahn 2021-10-21 14:26:03 +02:00
• c0a1d965d7 Add more optimization targets Elias Projahn 2021-10-21 11:42:44 +02:00
• 064f75ddae data: Remove n_species from genes Elias Projahn 2021-10-21 11:42:16 +02:00
• 0eac84377d Reimplement correlation with matrix based approach Elias Projahn 2021-10-20 11:09:37 +02:00
• e6bca4d515 Fix bugs in correlation method Elias Projahn 2021-10-19 17:34:36 +02:00
• 37f468658c Add framework for progress information Elias Projahn 2021-10-19 15:03:10 +02:00
• 16e83d38a8 Add README Elias Projahn 2021-10-19 13:47:33 +02:00
• c52d42c2b6 Initial commit Elias Projahn 2021-10-19 13:39:55 +02:00