Commit graph

20 commits

Author SHA1 Message Date
c60f6a8aff Remove neural network 2023-11-11 09:58:49 +01:00
44e170f5a6 Small documentation improvements 2023-09-27 13:24:23 +02:00
fddd0c3fa0 Fix preset bug when filtering species 2022-06-22 13:40:00 +02:00
3217c9bd29 preset: Filter species in addition to genes 2022-05-30 13:49:52 +02:00
c04b6337e9 Reindent code to use just two spaces 2022-05-26 12:42:19 +02:00
57fc119993 preset: Fix documentation cross-reference 2022-02-24 14:43:41 +01:00
ab61f08d0d preset: Filter reference genes and add warnings 2022-01-19 11:18:27 +01:00
c8f1e522f9 preset: Make reference genes the first parameter 2022-01-17 19:52:51 +01:00
e2b93babe5 Restructure classes and their responsibilities 2022-01-09 19:54:05 +01:00
2c15ba55c1 preset: Actually filter input genes 2021-11-27 12:09:52 +01:00
88b1a9ab6a Add new method adjacency 2021-11-27 12:09:52 +01:00
599f09a52f Remove position analysis 2021-11-22 15:16:05 +01:00
7d3bedb436 ranking: Add optimization for median 2021-11-21 23:56:15 +01:00
61422a6a06 neural: Reimplement merging positions and distances 2021-11-21 23:55:56 +01:00
5a58f457a4 analyze: Add optimization 2021-11-19 15:07:15 +01:00
de1c1ed40e preset: Remove min_n_species customization 2021-11-18 14:03:11 +01:00
33056bfa40 Move species count to analysis 2021-11-18 14:03:11 +01:00
9cbc127177 Fix some analysis bugs 2021-11-12 18:22:22 +01:00
6d9511fa2e Fix some package issues 2021-11-06 13:22:57 +01:00
55958e0d85 preset: Turn into S3 class 2021-11-03 14:17:39 +01:00