|
|
04809cdc76
|
analyze: Fix issue merging scores
|
2022-01-09 19:54:05 +01:00 |
|
|
|
1ec352b1d9
|
Update data to Ensembl version 105
|
2022-01-09 19:54:05 +01:00 |
|
|
|
2e27fbb95c
|
plots: Add more information to scores plot hover
|
2022-01-09 19:54:05 +01:00 |
|
|
|
a02f22c218
|
plots: Display percentiles in scores plot
|
2022-01-09 19:54:05 +01:00 |
|
|
|
a0dce372b6
|
ranking: Compute percentiles
|
2022-01-09 19:54:05 +01:00 |
|
|
|
48ff555e88
|
ranking: Cache optimizations
|
2022-01-09 19:54:05 +01:00 |
|
|
|
e2b93babe5
|
Restructure classes and their responsibilities
|
2022-01-09 19:54:05 +01:00 |
|
|
|
01ec301d6d
|
data: Remove absolute positions
|
2022-01-04 14:58:49 +01:00 |
|
|
|
d98c70a205
|
Use inherits() for class checking
|
2022-01-04 14:58:49 +01:00 |
|
|
|
207fc753a7
|
adjacency: Fix bug in density computation
|
2022-01-04 14:58:49 +01:00 |
|
|
|
8aafcb7555
|
clusteriness: Let weights decrease exponentially
|
2022-01-04 14:58:49 +01:00 |
|
|
|
d6ee59af4b
|
neural: Increase training time
|
2022-01-04 14:58:49 +01:00 |
|
|
|
1f5909cc02
|
plots: Improve scores plot performance
|
2022-01-04 14:58:49 +01:00 |
|
|
|
35fb5e3884
|
Add cross-validation function
|
2022-01-04 14:58:49 +01:00 |
|
|
|
83fedfe9be
|
neural: Use mean absolute error
|
2022-01-04 14:58:49 +01:00 |
|
|
|
397340cc64
|
neural: Use optimizer adam
|
2022-01-04 14:58:49 +01:00 |
|
|
|
8ced026b79
|
data: Add more chromosomes
|
2021-12-05 19:15:45 +01:00 |
|
|
|
f940d7d9b0
|
plots: Simplify positions plot
|
2021-12-03 11:33:51 +01:00 |
|
|
|
a347bf0ad4
|
plots: Refactor and improve
|
2021-12-02 17:23:18 +01:00 |
|
|
|
f997b5fdd7
|
plots: Add rankings plot
|
2021-12-02 15:28:03 +01:00 |
|
|
|
2c15ba55c1
|
preset: Actually filter input genes
|
2021-11-27 12:09:52 +01:00 |
|
|
|
c6a5c2b59c
|
neural: Store the serialized model
|
2021-11-27 12:09:52 +01:00 |
|
|
|
88b1a9ab6a
|
Add new method adjacency
|
2021-11-27 12:09:52 +01:00 |
|
|
|
b1eff374b3
|
Relicense to AGPL
|
2021-11-25 11:16:07 +01:00 |
|
|
|
c0e2dfced2
|
neural: Validate models and store training data
|
2021-11-23 16:26:04 +01:00 |
|
|
|
7c87788cad
|
neural: Use tensorflow seed
|
2021-11-23 11:08:21 +01:00 |
|
|
|
51e7176a1a
|
Store more method results
|
2021-11-23 09:56:02 +01:00 |
|
|
|
f2bc4318a2
|
Fix some package issues
|
2021-11-23 09:42:21 +01:00 |
|
|
|
599f09a52f
|
Remove position analysis
|
2021-11-22 15:16:05 +01:00 |
|
|
|
255123c74f
|
Regenerate documentation
|
2021-11-22 14:10:22 +01:00 |
|
|
|
2f3dc80a2f
|
plots: Add chromosome plot
|
2021-11-22 14:10:08 +01:00 |
|
|
|
1058dfaa17
|
neural: Add progress information
|
2021-11-22 13:32:50 +01:00 |
|
|
|
7d3bedb436
|
ranking: Add optimization for median
|
2021-11-21 23:56:15 +01:00 |
|
|
|
61422a6a06
|
neural: Reimplement merging positions and distances
|
2021-11-21 23:55:56 +01:00 |
|
|
|
5a58f457a4
|
analyze: Add optimization
|
2021-11-19 15:07:15 +01:00 |
|
|
|
b018838d37
|
analysis: Cache the analysis object itself
|
2021-11-18 15:18:07 +01:00 |
|
|
|
de1c1ed40e
|
preset: Remove min_n_species customization
|
2021-11-18 14:03:11 +01:00 |
|
|
|
33056bfa40
|
Move species count to analysis
|
2021-11-18 14:03:11 +01:00 |
|
|
|
f84d37dd30
|
neural: Readd distances as input data
|
2021-11-18 14:03:11 +01:00 |
|
|
|
88d6837fee
|
ranking: Allow negative weights
|
2021-11-18 14:03:11 +01:00 |
|
|
|
47a26da94a
|
neural: Exclude genes from training for themselves
|
2021-11-18 14:03:11 +01:00 |
|
|
|
e28bcaafed
|
plots: Add position plot
|
2021-11-15 15:12:13 +01:00 |
|
|
|
19bae34a96
|
plots: Add max_rank to score plot
|
2021-11-15 09:21:37 +01:00 |
|
|
|
1af138bf6f
|
neural: Always use position data
|
2021-11-14 19:27:11 +01:00 |
|
|
|
4b1ab9fc9a
|
correlation: Fix data preparation
|
2021-11-14 17:49:16 +01:00 |
|
|
|
7bd63aa6d3
|
proximity: Remove use_positions
|
2021-11-14 17:21:39 +01:00 |
|
|
|
cfc5e7a6bf
|
Implement all methods using positions additionally
|
2021-11-14 16:35:59 +01:00 |
|
|
|
9cbc127177
|
Fix some analysis bugs
|
2021-11-12 18:22:22 +01:00 |
|
|
|
0e641e4dd2
|
ranking: Fix error copying the input
|
2021-11-12 10:33:33 +01:00 |
|
|
|
4dda7fa49e
|
ranking: Filter out species with too few species
|
2021-11-12 10:25:07 +01:00 |
|
