johrpan/ubigen
1
0
Fork 0
mirror of https://github.com/johrpan/ubigen.git synced 2025-10-26 11:47:24 +01:00
Code Issues Projects Releases Packages Wiki Activity Actions
Interactive web application for analyzing ubiquitously expressed genes https://ubigen.uni-rostock.de
88 commits 2 branches 1 tag 43 MiB
Find a file
Elias Projahn 54b3315041 scripts: Fix typo gsea/gtex
2024-12-01 17:02:46 +01:00
data data: Compress using xz 2024-04-26 18:57:11 +02:00
inst style: Fix issues with updated Bootstrap 2024-03-14 19:45:14 +01:00
man Add rankings comparison plot 2024-04-26 20:52:45 +02:00
R Add rankings comparison section 2024-04-26 20:52:56 +02:00
scripts scripts: Fix typo gsea/gtex 2024-12-01 17:02:46 +01:00
.Rbuildignore Add script for performing a bucket-wise GSEA 2022-06-15 10:25:11 +02:00
DESCRIPTION data: Compress using xz 2024-04-26 18:57:11 +02:00
LICENSE.md Initial commit 2022-05-07 17:54:23 +02:00
NAMESPACE Add rankings comparison plot 2024-04-26 20:52:45 +02:00
README.md Fix typo in README 2022-06-22 11:11:03 +00:00

README.md

Ubigen

This R package contains precomputed data including comparisons in gene expression within the GTEx database. It provides a graphical interface to analyze and visualize those data to rank genes based on how ubiquitously expressed they are.

Installation

You can install the development version of ubigen using:

# install.packages("remotes")
remotes::install_git("https://code.johrpan.de/johrpan/ubigen.git")

Usage

You only need one function to get started. It will run the application and serve the graphical user interface which can be viewed using your preferred web browser.

ubigen::run_app()

For additional information, take a look at the built-in documentation (?ubigen::run_app).

License

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.