mirror of
https://github.com/johrpan/ubigen.git
synced 2025-10-26 19:57:24 +01:00
28 lines
888 B
R
28 lines
888 B
R
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/ranking.R
|
|
\name{rank_genes}
|
|
\alias{rank_genes}
|
|
\title{Rank genes based on how ubiquitous they are.}
|
|
\usage{
|
|
rank_genes(
|
|
data = ubigen::gtex_all,
|
|
cross_sample_metric = "above_95",
|
|
cross_sample_weight = 0.5,
|
|
level_metric = "median_expression_normalized",
|
|
level_weight = 0.25,
|
|
variation_metric = "qcv_expression_normalized",
|
|
variation_weight = -0.25
|
|
)
|
|
}
|
|
\arguments{
|
|
\item{data}{The input data to use. This should either be the result of a
|
|
previous call to this function or the return value of \code{\link[=analyze]{analyze()}}.}
|
|
}
|
|
\value{
|
|
A \code{data.table} with gene data as well as the scores, ranks and
|
|
percentiles for each gene.
|
|
}
|
|
\description{
|
|
This function will compute a weighted average across multiple metrics that
|
|
define how ubiquitous a gene is based on its expression across samples.
|
|
}
|