mirror of
https://github.com/johrpan/ubigen.git
synced 2025-10-26 19:57:24 +01:00
12 lines
No EOL
422 B
R
12 lines
No EOL
422 B
R
library(data.table)
|
|
library(here)
|
|
|
|
i_am("scripts/hpa_tissues.R")
|
|
|
|
# Source: https://www.proteinatlas.org/download/rna_tissue_hpa.tsv.zip
|
|
data <- fread(here("scripts", "input", "rna_tissue_hpa.tsv"))
|
|
setnames(data, c("Gene", "Tissue", "nTPM"), c("gene", "sample", "expression"))
|
|
data[, `:=`("Gene name" = NULL, TPM = NULL, pTPM = NULL)]
|
|
|
|
hpa_tissues <- ubigen::analyze(data)
|
|
usethis::use_data(hpa_tissues, overwrite = TRUE) |