johrpan/ubigen
1
0
Fork 0
mirror of https://github.com/johrpan/ubigen.git synced 2025-10-26 19:57:24 +01:00
Code Issues Projects Releases Packages Wiki Activity Actions

Include more features

Browse source
This commit is contained in:
Elias Projahn 2022-05-12 13:03:13 +02:00
parent c9b26cc823
commit b4d758ff03
2 changed files with 60 additions and 8 deletions
Download patch file Download diff file Expand all files Collapse all files

8
R/server.R
View file

@ -2,14 +2,18 @@
#' @noRd
server <- function(input, output) {
ranked_data <- reactive({
total_weight <- abs(input$above_median) +
total_weight <- abs(input$above_zero) +
abs(input$above_median) +
abs(input$above_95) +
abs(input$mean_expression) +
abs(input$sd_expression)
data <- data.table::copy(ubigen::genes)
data[, score :=
(input$above_median * above_median +
(input$above_zero * above_zero +
input$above_95 * above_95 +
input$above_median * above_median +
input$mean_expression * mean_expression_normalized +
input$sd_expression * sd_expression_normalized) /
total_weight]

60
R/ui.R
View file

@ -13,18 +13,60 @@ ui <- function() {
sidebarLayout(
sidebarPanel(
width = 3,
h3("Criteria"),
h3("Features"),
sliderInput(
"above_median",
"Expressed above median",
"above_zero",
verticalLayout(
strong("Expressed"),
paste0(
"Percentage of samples in which the gene is ",
"expressed."
)
),
min = -1.0,
max = 1.0,
step = 0.01,
value = 1.0
value = 0.33
),
sliderInput(
"above_median",
verticalLayout(
strong("Expressed above median"),
paste0(
"Percentage of samples that express the gene ",
"more than the median of expression within ",
"that sample."
)
),
min = -1.0,
max = 1.0,
step = 0.01,
value = 0.33
),
sliderInput(
"above_95",
verticalLayout(
strong("Expressed above 95%"),
paste0(
"Percentage of samples that express the gene ",
"more than the 95. percentile of expression ",
"within that sample."
)
),
min = -1.0,
max = 1.0,
step = 0.01,
value = 0.33
),
sliderInput(
"mean_expression",
"Mean expression",
verticalLayout(
strong("Mean expression"),
div(paste0(
"Average of the gene's expression across all ",
"samples."
))
),
min = -1.0,
max = 1.0,
step = 0.01,
@ -32,7 +74,13 @@ ui <- function() {
),
sliderInput(
"sd_expression",
"Standard deviation",
verticalLayout(
strong("Standard deviation"),
paste0(
"Standard deviation of the gene's expression ",
"across all samples."
)
),
min = -1.0,
max = 1.0,
step = 0.01,