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Reintroduce mean expression as metric

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This commit is contained in:
Elias Projahn 2022-06-06 15:56:34 +02:00
parent 0ee713a966
commit 882891da53
2 changed files with 17 additions and 2 deletions
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6
R/server.R
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@ -2,11 +2,15 @@
#' @noRd
server <- function(input, output, session) {
ranked_data <- reactive({
total_weight <- abs(input$cross_sample_weight) + abs(input$sd_expression)
total_weight <- abs(input$cross_sample_weight) +
abs(input$mean_expression) +
abs(input$sd_expression)
data <- data.table::copy(ubigen::genes)
data[, score :=
(input$cross_sample_weight * get(input$cross_sample_metric) +
input$mean_expression * mean_expression_normalized +
input$sd_expression * sd_expression_normalized) /
total_weight]

13
R/ui.R
View file

@ -41,6 +41,17 @@ ui <- function() {
step = 0.01,
value = 0.5
),
sliderInput(
"mean_expression",
verticalLayout(
strong("Mean Expression"),
"Mean expression of the gene across all samples."
),
min = -1.0,
max = 1.0,
step = 0.01,
value = 0.25
),
sliderInput(
"sd_expression",
verticalLayout(
@ -50,7 +61,7 @@ ui <- function() {
min = -1.0,
max = 1.0,
step = 0.01,
value = -0.5
value = -0.25
)
),
mainPanel(