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Remove mean expression from score

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This commit is contained in:
Elias Projahn 2022-05-30 20:25:50 +02:00
parent d495af011a
commit 780e608ee1
2 changed files with 4 additions and 25 deletions
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6
R/server.R
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@ -2,15 +2,11 @@
#' @noRd
server <- function(input, output) {
ranked_data <- reactive({
total_weight <- abs(input$cross_sample_weight) +
abs(input$mean_expression) +
abs(input$sd_expression)
total_weight <- abs(input$cross_sample_weight) + abs(input$sd_expression)
data <- data.table::copy(ubigen::genes)
data[, score :=
(input$cross_sample_weight * get(input$cross_sample_metric) +
input$mean_expression * mean_expression_normalized +
input$sd_expression * sd_expression_normalized) /
total_weight]

23
R/ui.R
View file

@ -36,35 +36,18 @@ ui <- function() {
min = -1.0,
max = 1.0,
step = 0.01,
value = 1.0
),
sliderInput(
"mean_expression",
verticalLayout(
strong("Mean expression"),
div(paste0(
"Average of the gene's expression across all ",
"samples."
))
),
min = -1.0,
max = 1.0,
step = 0.01,
value = 1.0
value = 0.5
),
sliderInput(
"sd_expression",
verticalLayout(
strong("Standard deviation"),
paste0(
"Standard deviation of the gene's expression ",
"across all samples."
)
"Standard deviation of the gene's expression across all samples."
),
min = -1.0,
max = 1.0,
step = 0.01,
value = -1.0
value = -0.5
)
),
mainPanel(