johrpan/ubigen
1
0
Fork 0
mirror of https://github.com/johrpan/ubigen.git synced 2025-10-26 19:57:24 +01:00
Code Issues Projects Releases Packages Wiki Activity Actions

Allow selecting the expression dataset

Browse source
This commit is contained in:
Elias Projahn 2022-12-01 21:23:46 +01:00
parent 2f24812c90
commit 510fafeb6e
15 changed files with 110 additions and 57 deletions
Download patch file Download diff file Expand all files Collapse all files

6
man/genes.Rd
View file

@ -3,14 +3,14 @@
\docType{data}
\name{genes}
\alias{genes}
\title{A \code{data.table} containig data on genes and their expression behavior.}
\title{A \code{data.table} containig mappings of Ensembl gene ID to HGNC symbol.}
\format{
An object of class \code{data.table} (inherits from \code{data.frame}) with 55507 rows and 20 columns.
An object of class \code{data.table} (inherits from \code{data.frame}) with 55507 rows and 2 columns.
}
\usage{
genes
}
\description{
A \code{data.table} containig data on genes and their expression behavior.
A \code{data.table} containig mappings of Ensembl gene ID to HGNC symbol.
}
\keyword{datasets}

16
man/gtex_all.Rd Normal file
View file

@ -0,0 +1,16 @@
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{gtex_all}
\alias{gtex_all}
\title{The results from the analysis across all GTEx samples.}
\format{
An object of class \code{data.table} (inherits from \code{data.frame}) with 55507 rows and 17 columns.
}
\usage{
gtex_all
}
\description{
The results from the analysis across all GTEx samples.
}
\keyword{datasets}

18
man/hpa_tissues.Rd Normal file
View file

@ -0,0 +1,18 @@
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{hpa_tissues}
\alias{hpa_tissues}
\title{The results from the analysis across Human Protein Atlas' tissue aggregated
data.}
\format{
An object of class \code{data.table} (inherits from \code{data.frame}) with 20090 rows and 17 columns.
}
\usage{
hpa_tissues
}
\description{
The results from the analysis across Human Protein Atlas' tissue aggregated
data.
}
\keyword{datasets}

2
man/rank_genes.Rd
View file

@ -5,7 +5,7 @@
\title{Rank genes based on how ubiquitous they are.}
\usage{
rank_genes(
data = ubigen::genes,
data = ubigen::gtex_all,
cross_sample_metric = "above_95",
cross_sample_weight = 0.5,
level_metric = "median_expression_normalized",