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Use newly computed metrics

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This commit is contained in:
Elias Projahn 2022-09-25 20:01:42 +02:00
parent 76f81ab6a7
commit 3829154c1e
9 changed files with 64 additions and 57 deletions
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20
man/rank_genes.Rd
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@ -7,24 +7,12 @@
rank_genes(
cross_sample_metric = "above_95",
cross_sample_weight = 0.5,
mean_expression_weight = 0.25,
sd_expression_weight = -0.25
level_metric = "median_expression_normalized",
level_weight = 0.25,
variation_metric = "qcv_expression_normalized",
variation_weight = -0.25
)
}
\arguments{
\item{cross_sample_metric}{Metric to use for calculating the number of
samples a gene is expressed in. One of \code{above_95}, \code{above_median} or
\code{above_zero}.}
\item{cross_sample_weight}{Weighting of the cross sample metric within the
final score.}
\item{mean_expression_weight}{Weighting of the gene's mean expression within
the final score.}
\item{sd_expression_weight}{Weighting of the standard deviation of the
gene's expression within the final score.}
}
\value{
A \code{data.table} with gene data as well as the scores, ranks and
percentiles for each gene.