Add screenshots to help page

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Elias Projahn 2022-12-16 14:26:00 +01:00
parent a046ed67c4
commit 254c43b016
6 changed files with 13 additions and 0 deletions

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@ -16,6 +16,8 @@ from a dropdown menu. To paste your genes as a whitespace separated list of
either HGNC symbols or Ensembl gene IDs (in the form `ENSG00000164362`), change
the top dropdown from "Select from list" to the desired input method.
![Screenshot of the gene selector](gene_selector.png)
## Which information does the tool give for my genes of interest?
Once your genes have been selected, the user interface will automatically switch
@ -33,6 +35,8 @@ their top right corner):
4. A detailed table (downloadable as CSV) including scores, ranks and
percentiles as well as the computed parameters for your genes.
![Screenshot of information on custom genes](custom_genes.png)
## How can I change the parameters of the method?
The panel on the left side offers multiple controls to change the parameters of
@ -46,6 +50,8 @@ as well as their weight contributing to that score. These are the criteria:
| Expression level | The median expression level (logarithmic) is determined for each gene across all samples. Alternatively, it is possible to select the mean expression. | 25% |
| Expression variation | Measure of the variation of a genes expression between samples. By default, the interquartile range (IQR) normalized by the median is used. Other options include the IQR itself, the standard deviation and the coefficient of variation. | -25% |
![Screenshot of the method parameter controls](method_parameters.png)
## What does the GSEA tab do?
The "GSEA" tab provides a simple gene set enrichment analysis using
@ -54,6 +60,8 @@ of over-representation of annotated genes in the top part of the ranking which
is a way to insinuate the biological or at least scientific relevance of the
scoring.
![Screenshot of the GSEA plot](gsea.png)
## How can I perform analyses of ubiquity relative to my own expression dataset?
Because of the computational requirements we can not publicly provide this

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@ -35,4 +35,9 @@ h5 {
.container th,
.container td {
padding: 4px;
}
.container img {
max-width: 100%;
height: auto;
}