|
|
ca1d0e442a
|
Add preset editor
|
2021-10-21 14:56:19 +02:00 |
|
|
|
365cf13dcb
|
Add more optimization targets
|
2021-10-21 11:43:34 +02:00 |
|
|
|
2aed917478
|
Add README
|
2021-10-20 15:39:15 +02:00 |
|
|
|
d4611f47cf
|
Convert to R package
|
2021-10-20 15:34:52 +02:00 |
|
|
|
b2e2dbf1af
|
Fix assessment synopsis
|
2021-10-20 11:30:32 +02:00 |
|
|
|
b2402ea997
|
Compute n_species dynamically
|
2021-10-20 11:20:20 +02:00 |
|
|
|
bf6df6af86
|
Move methods to separate module
|
2021-10-19 16:44:29 +02:00 |
|
|
|
079deb0faf
|
Add progress indicator for analysis
|
2021-10-19 15:05:01 +02:00 |
|
|
|
dc0265a13f
|
Separate out geposan package
|
2021-10-19 14:15:28 +02:00 |
|
|
|
68354bf808
|
Reorganize source files and generalize presets
|
2021-10-16 21:46:59 +02:00 |
|
|
|
8104e9bd8a
|
Add optimizer and buttons to disable methods
|
2021-10-16 17:02:39 +02:00 |
|
|
|
529f4a553b
|
Fix issue in rank plot
|
2021-10-15 18:33:21 +02:00 |
|
|
|
7800cc09b4
|
Add more assessment information
|
2021-10-15 15:03:40 +02:00 |
|
|
|
aaff5878ec
|
Organize output in tabs
|
2021-10-15 13:59:00 +02:00 |
|
|
|
527ba01cc9
|
Add rank plot
|
2021-10-15 13:16:51 +02:00 |
|
|
|
114193506b
|
Port scatter plot to plotly
|
2021-10-15 12:24:28 +02:00 |
|
|
|
fcd9b4ee05
|
Rearrange user interface
|
2021-10-15 11:46:15 +02:00 |
|
|
|
7b9a42215e
|
Add new method proximity
|
2021-10-15 09:27:35 +02:00 |
|
|
|
9b0b3c13f5
|
Generalize method definitions
|
2021-10-15 09:26:57 +02:00 |
|
|
|
d3edeefbe2
|
Only retrieve assembled chromosomes
|
2021-10-11 15:10:03 +02:00 |
|
|
|
c26e4ff4a3
|
Add option to penalize missing values
|
2021-10-11 11:14:08 +02:00 |
|
|
|
4222a08b87
|
Add slider to set required number of species
|
2021-10-11 11:08:50 +02:00 |
|
|
|
48aa46c2c4
|
input: Only connect to Ensembl if necessary
|
2021-10-11 10:17:58 +02:00 |
|
|
|
d87474e574
|
Update correlation method
This adds some performance optimizations and removes the penalty for
missing values.
|
2021-10-11 10:10:28 +02:00 |
|
|
|
cd63486f0a
|
clusteriness: Don't penalize missing values yet
|
2021-10-11 09:48:48 +02:00 |
|
|
|
b122f2e240
|
Optimize clustering for speed
|
2021-10-09 14:22:28 +02:00 |
|
|
|
ae0643741a
|
Add buttons to copy results
|
2021-10-07 12:59:04 +02:00 |
|
|
|
686af3f44b
|
Disable gost by default
|
2021-10-07 12:42:36 +02:00 |
|
|
|
f002758fc8
|
Add gene set enrichment analysis
|
2021-10-07 12:18:47 +02:00 |
|
|
|
d73908acab
|
Optimize ranking weights
|
2021-10-07 11:31:45 +02:00 |
|
|
|
0aa88119d2
|
Add experimental neural network
|
2021-10-05 18:30:12 +02:00 |
|
|
|
397b8d0ba2
|
Base clusteriness on species count
|
2021-10-04 09:19:38 +02:00 |
|
|
|
8b727a0329
|
Add links to Ensembl for genes
|
2021-10-01 09:50:04 +02:00 |
|
|
|
8fc743fe10
|
Display score and add cut-off filter
|
2021-09-30 13:25:39 +02:00 |
|
|
|
91c15045cf
|
Add new clusteriness score
|
2021-09-30 12:54:40 +02:00 |
|
|
|
ba7c624705
|
Enhance progress information
|
2021-09-21 16:47:13 +02:00 |
|
|
|
8e54dacd3d
|
Order data before correlating
|
2021-09-19 20:19:20 +02:00 |
|
|
|
e9c05fdbab
|
Reinclude human into distance data
|
2021-09-19 12:07:59 +02:00 |
|
|
|
22b25c9b83
|
Fix cluster length slider
|
2021-09-19 09:57:27 +02:00 |
|
|
|
03be4bfe5d
|
Add weighted ranking
|
2021-09-18 23:33:37 +02:00 |
|
|
|
9d6b2e4d50
|
Add new correlation method
|
2021-09-18 23:10:52 +02:00 |
|
|
|
1cea6c3631
|
Retrieve input data using biomaRt
|
2021-09-16 00:06:54 +02:00 |
|
|
|
040aabc610
|
Relayout user interface
|
2021-08-29 15:53:31 +02:00 |
|
|
|
7b06f626b9
|
Add synopsis of results
|
2021-08-29 15:29:34 +02:00 |
|
|
|
437ae6de84
|
Include data on TPE-OLD status of genes
|
2021-08-29 14:02:37 +02:00 |
|
|
|
42d8da7e77
|
Add scrolling to output
|
2021-08-29 13:43:14 +02:00 |
|
|
|
3fd8ef6269
|
Allow using all species for processing
|
2021-08-29 13:25:12 +02:00 |
|
|
|
b69b3e9d2d
|
Always use the largest cluster
|
2021-08-26 14:37:17 +02:00 |
|
|
|
1c88458ce7
|
Fix minor issues
|
2021-08-26 12:51:43 +02:00 |
|
|
|
363dee2cbd
|
Enhance scatter plot
|
2021-08-26 12:50:03 +02:00 |
|
