Steffen Moeller
2ebb55fac6
First outline of a documentation.
...
Also adjusted .gitignore
2024-02-18 09:24:37 +01:00
64c616ec05
methods: Add help popover
2024-01-31 12:20:07 +01:00
e0e92e0fcc
Update custom styles
2024-01-31 11:17:25 +01:00
b0d3d9fe50
results: Adapt to changes in geposan
2023-11-11 16:17:31 +01:00
1dc6315e78
results: Add new chromosome overview plot
2023-11-11 09:51:31 +01:00
e2ba8586c4
Require R 4.1
2023-09-27 13:00:49 +02:00
f9fcb16130
results: Show method correlation coefficient
2022-08-30 10:26:40 +02:00
f0a8bce297
gsea: Properly show empty results
2022-08-30 10:13:28 +02:00
49d5a3f281
gsea: Add link to g:Profiler
2022-08-22 15:48:25 +02:00
6938cb0d84
User interface and style improvements
2022-08-18 19:25:05 +02:00
447fdfab4f
Move filtering to tabs that use it
2022-08-18 19:25:05 +02:00
9fb6ca428e
gsea: Move to separate module
2022-08-18 19:25:05 +02:00
045d4dd6ad
details: Improve download and table
2022-08-18 19:25:05 +02:00
d61fc157f4
Make preset methods configurable
2022-08-18 19:25:05 +02:00
e9033883a5
Separate reference and comparison gene sets
2022-08-18 19:25:05 +02:00
7f0090620b
Move results page to separate module
2022-08-18 19:25:05 +02:00
bd3446716b
Rename results module to details
2022-08-18 19:25:05 +02:00
170a92dd56
Allow showing all genes in correlation plot
2022-08-18 19:25:05 +02:00
4e31d4ef79
Add rankings correlation plot
2022-08-18 19:25:05 +02:00
c78802425c
Add positions plot to results page
2022-08-18 19:25:05 +02:00
c2328c0847
Use correct background and show increase for GSEA
2022-08-18 19:25:05 +02:00
12129ac65a
Remove max rank from scores plot
2022-08-18 19:25:05 +02:00
eed1cbe86b
Temporarily remove DisGeNET integration
...
Supplying the custom background results in internal server errors on the
DisGeNET backend. We don't want to present results without a proper
background set.
2022-08-18 19:25:05 +02:00
b5ca619a0d
Supply custom background for enrichment
2022-08-18 19:25:05 +02:00
4378e87b2a
Make custom genes default in comparison editor
2022-06-22 13:55:47 +02:00
e7cbb4ea33
Move comparison editor to results page
2022-06-22 13:48:37 +02:00
9960379645
Show confidence intervals for comparison
2022-06-03 17:56:14 +02:00
b026d8e079
Use virtualselect from shinyWidgets
2022-06-02 19:08:01 +02:00
c7ccaa657b
filters: Allow filter ranges for percentiles etc
2022-05-30 14:21:49 +02:00
a00d038361
Sort species in input data plot
2022-05-28 17:12:44 +02:00
421bb79a0b
Remove global methods data
2022-05-26 17:55:40 +02:00
13b5efc1e3
Reindent code to use just two spaces
2022-05-26 12:44:09 +02:00
47b8d7a1f0
Show all chromosomes in position plot by default
2022-05-23 11:39:30 +02:00
17b738378a
Show distances in results and add filtering
2022-05-23 11:24:49 +02:00
507f90e084
Add comparison text
2022-05-22 15:17:02 +02:00
cf642242ce
Hide messages from disgenet2r
2022-05-22 14:11:02 +02:00
717b3eb789
Don't use DT's bootstrap theme
2022-05-22 14:08:58 +02:00
f6420eaf3f
Rename to geposanui and update README
2022-05-20 09:38:26 +02:00
8f6ebc290f
Allow changing the application title
2022-05-19 16:28:59 +02:00
74d7865389
Add options to configure default gene sets
2022-05-19 16:24:23 +02:00
22f5e86625
Show gene sets in positions plot
2022-05-18 17:33:11 +02:00
6a5e5ed9c6
Add chromosomal positions plot
2022-05-17 21:58:40 +02:00
40164ebf84
server: Cache analysis transiently
2022-02-24 17:24:40 +01:00
0ca4063429
methods: Cache optimization transiently
2022-02-24 17:24:40 +01:00
e61546b53c
Add separate gene selector component
2022-02-24 17:24:40 +01:00
95efb731bf
preset_editor: Set default custom reference genes
2022-01-25 16:28:59 +01:00
2ced93aa94
Switch to the results page when the preset changes
2022-01-25 16:27:18 +01:00
2faaeb869a
methods: Allow to optimize for comparison genes
2022-01-25 13:05:23 +01:00
11c125465d
Refactor input page and handle preset errors
2022-01-25 13:05:23 +01:00
aa4c655c53
preset_editor: Don't produce invalid presets
2022-01-20 11:04:49 +01:00
