170a92dd56
Allow showing all genes in correlation plot
2022-08-18 19:25:05 +02:00
4e31d4ef79
Add rankings correlation plot
2022-08-18 19:25:05 +02:00
c78802425c
Add positions plot to results page
2022-08-18 19:25:05 +02:00
c2328c0847
Use correct background and show increase for GSEA
2022-08-18 19:25:05 +02:00
12129ac65a
Remove max rank from scores plot
2022-08-18 19:25:05 +02:00
eed1cbe86b
Temporarily remove DisGeNET integration
...
Supplying the custom background results in internal server errors on the
DisGeNET backend. We don't want to present results without a proper
background set.
2022-08-18 19:25:05 +02:00
b5ca619a0d
Supply custom background for enrichment
2022-08-18 19:25:05 +02:00
4378e87b2a
Make custom genes default in comparison editor
2022-06-22 13:55:47 +02:00
e7cbb4ea33
Move comparison editor to results page
2022-06-22 13:48:37 +02:00
9960379645
Show confidence intervals for comparison
2022-06-03 17:56:14 +02:00
b026d8e079
Use virtualselect from shinyWidgets
2022-06-02 19:08:01 +02:00
c7ccaa657b
filters: Allow filter ranges for percentiles etc
2022-05-30 14:21:49 +02:00
a00d038361
Sort species in input data plot
2022-05-28 17:12:44 +02:00
421bb79a0b
Remove global methods data
2022-05-26 17:55:40 +02:00
13b5efc1e3
Reindent code to use just two spaces
2022-05-26 12:44:09 +02:00
47b8d7a1f0
Show all chromosomes in position plot by default
2022-05-23 11:39:30 +02:00
17b738378a
Show distances in results and add filtering
2022-05-23 11:24:49 +02:00
507f90e084
Add comparison text
2022-05-22 15:17:02 +02:00
cf642242ce
Hide messages from disgenet2r
2022-05-22 14:11:02 +02:00
717b3eb789
Don't use DT's bootstrap theme
2022-05-22 14:08:58 +02:00
f6420eaf3f
Rename to geposanui and update README
2022-05-20 09:38:26 +02:00
8f6ebc290f
Allow changing the application title
2022-05-19 16:28:59 +02:00
74d7865389
Add options to configure default gene sets
2022-05-19 16:24:23 +02:00
22f5e86625
Show gene sets in positions plot
2022-05-18 17:33:11 +02:00
6a5e5ed9c6
Add chromosomal positions plot
2022-05-17 21:58:40 +02:00
40164ebf84
server: Cache analysis transiently
2022-02-24 17:24:40 +01:00
0ca4063429
methods: Cache optimization transiently
2022-02-24 17:24:40 +01:00
e61546b53c
Add separate gene selector component
2022-02-24 17:24:40 +01:00
95efb731bf
preset_editor: Set default custom reference genes
2022-01-25 16:28:59 +01:00
2ced93aa94
Switch to the results page when the preset changes
2022-01-25 16:27:18 +01:00
2faaeb869a
methods: Allow to optimize for comparison genes
2022-01-25 13:05:23 +01:00
11c125465d
Refactor input page and handle preset errors
2022-01-25 13:05:23 +01:00
aa4c655c53
preset_editor: Don't produce invalid presets
2022-01-20 11:04:49 +01:00
8a9ae63350
data: Remove redundant species table
2022-01-17 20:42:27 +01:00
bcd2a615b1
Adapt to geposan preset changes
2022-01-17 20:36:34 +01:00
f1b78d0081
filters: Increase rank granularity
2022-01-17 20:27:28 +01:00
04b615bb7c
server: Generate rankings plot from preset
2022-01-13 13:37:02 +01:00
c8e1e311dc
results: Add download button
2021-12-30 12:33:50 +01:00
7834360e2a
results: Move to separate module
2021-12-30 12:33:50 +01:00
b6e9179f13
server: Show percentiles in results table
2021-12-30 12:33:50 +01:00
471f2773aa
methods: Automatically change to custom weighting
2021-12-17 13:14:42 +01:00
2bf96ffd38
Adapt to changes in geposan
2021-12-16 13:52:14 +01:00
f1337f0331
filters: Add default filter based on percentile
2021-12-15 13:00:21 +01:00
663128271e
Allow manually entering genes
2021-12-15 12:41:35 +01:00
7bef0f3bda
ui: Use bootstrap version 5
2021-12-15 12:41:12 +01:00
2041cf2c2c
Add DisGeNET integration
2021-12-08 14:49:50 +01:00
36546570e0
Update gprofiler integration
2021-12-08 14:38:38 +01:00
ffa90cd667
Further simplify results section
2021-12-08 14:11:39 +01:00
f318cde5e7
Update UI with navbar and selectize
2021-12-08 13:46:59 +01:00
b6e1bc6603
Add rankings plot
2021-12-06 14:24:31 +01:00
