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f485eadaf5
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Adapt to geposan changes and add new methods
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2021-11-14 22:34:46 +01:00 |
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9709360d45
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Improve species slider performance
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2021-11-02 15:07:04 +01:00 |
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69a8326fbc
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presets: Improve performance
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2021-11-02 14:42:52 +01:00 |
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766ffa15cb
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filters: Improve user interface
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2021-11-02 14:28:04 +01:00 |
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b57297dfdf
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Allow filtering by rank
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2021-11-02 13:41:03 +01:00 |
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667eb8f2a3
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Properly set replicative species
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2021-10-21 17:34:53 +02:00 |
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4cf5bff125
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Move caching to geposan
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2021-10-21 17:26:28 +02:00 |
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33c8292690
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Fix disabling of method sliders
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2021-10-21 16:10:46 +02:00 |
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40cb8e6cbd
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Add workaround to include java script dependencies
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2021-10-21 15:57:08 +02:00 |
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ca1d0e442a
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Add preset editor
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2021-10-21 14:56:19 +02:00 |
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365cf13dcb
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Add more optimization targets
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2021-10-21 11:43:34 +02:00 |
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2aed917478
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Add README
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2021-10-20 15:39:15 +02:00 |
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d4611f47cf
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Convert to R package
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2021-10-20 15:34:52 +02:00 |
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b2e2dbf1af
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Fix assessment synopsis
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2021-10-20 11:30:32 +02:00 |
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b2402ea997
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Compute n_species dynamically
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2021-10-20 11:20:20 +02:00 |
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bf6df6af86
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Move methods to separate module
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2021-10-19 16:44:29 +02:00 |
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079deb0faf
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Add progress indicator for analysis
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2021-10-19 15:05:01 +02:00 |
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dc0265a13f
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Separate out geposan package
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2021-10-19 14:15:28 +02:00 |
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68354bf808
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Reorganize source files and generalize presets
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2021-10-16 21:46:59 +02:00 |
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8104e9bd8a
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Add optimizer and buttons to disable methods
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2021-10-16 17:02:39 +02:00 |
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529f4a553b
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Fix issue in rank plot
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2021-10-15 18:33:21 +02:00 |
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7800cc09b4
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Add more assessment information
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2021-10-15 15:03:40 +02:00 |
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aaff5878ec
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Organize output in tabs
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2021-10-15 13:59:00 +02:00 |
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527ba01cc9
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Add rank plot
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2021-10-15 13:16:51 +02:00 |
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114193506b
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Port scatter plot to plotly
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2021-10-15 12:24:28 +02:00 |
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fcd9b4ee05
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Rearrange user interface
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2021-10-15 11:46:15 +02:00 |
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7b9a42215e
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Add new method proximity
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2021-10-15 09:27:35 +02:00 |
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9b0b3c13f5
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Generalize method definitions
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2021-10-15 09:26:57 +02:00 |
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d3edeefbe2
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Only retrieve assembled chromosomes
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2021-10-11 15:10:03 +02:00 |
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c26e4ff4a3
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Add option to penalize missing values
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2021-10-11 11:14:08 +02:00 |
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4222a08b87
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Add slider to set required number of species
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2021-10-11 11:08:50 +02:00 |
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48aa46c2c4
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input: Only connect to Ensembl if necessary
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2021-10-11 10:17:58 +02:00 |
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d87474e574
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Update correlation method
This adds some performance optimizations and removes the penalty for
missing values.
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2021-10-11 10:10:28 +02:00 |
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cd63486f0a
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clusteriness: Don't penalize missing values yet
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2021-10-11 09:48:48 +02:00 |
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b122f2e240
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Optimize clustering for speed
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2021-10-09 14:22:28 +02:00 |
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ae0643741a
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Add buttons to copy results
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2021-10-07 12:59:04 +02:00 |
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686af3f44b
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Disable gost by default
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2021-10-07 12:42:36 +02:00 |
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f002758fc8
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Add gene set enrichment analysis
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2021-10-07 12:18:47 +02:00 |
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d73908acab
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Optimize ranking weights
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2021-10-07 11:31:45 +02:00 |
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0aa88119d2
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Add experimental neural network
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2021-10-05 18:30:12 +02:00 |
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397b8d0ba2
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Base clusteriness on species count
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2021-10-04 09:19:38 +02:00 |
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8b727a0329
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Add links to Ensembl for genes
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2021-10-01 09:50:04 +02:00 |
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8fc743fe10
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Display score and add cut-off filter
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2021-09-30 13:25:39 +02:00 |
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91c15045cf
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Add new clusteriness score
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2021-09-30 12:54:40 +02:00 |
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ba7c624705
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Enhance progress information
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2021-09-21 16:47:13 +02:00 |
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8e54dacd3d
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Order data before correlating
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2021-09-19 20:19:20 +02:00 |
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e9c05fdbab
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Reinclude human into distance data
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2021-09-19 12:07:59 +02:00 |
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22b25c9b83
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Fix cluster length slider
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2021-09-19 09:57:27 +02:00 |
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03be4bfe5d
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Add weighted ranking
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2021-09-18 23:33:37 +02:00 |
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9d6b2e4d50
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Add new correlation method
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2021-09-18 23:10:52 +02:00 |
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