Commit graph

22 commits

Author SHA1 Message Date
0f53c3e798 Rename method proximity to distance 2022-08-18 19:22:21 +02:00
0ae6836d86 Remove species adjacency method 2022-06-28 13:06:59 +02:00
2529f35660 Allow to limit number of clusters for clusteriness 2022-06-22 13:40:00 +02:00
7e53015168 Add chromosomal positions plot 2022-05-17 21:48:30 +02:00
99bc6794b9 Revert "proximity: Remove method"
This reverts commit ac9894e988.
2022-02-24 17:39:44 +01:00
53f955f3da Add species adjacency method 2022-01-19 11:18:27 +01:00
8cda3e8e83 adjacency: Revert to density estimate
This reverts commit 23bb499d3a.
2022-01-13 18:35:02 +01:00
23bb499d3a adjacency: Use median as estimate 2022-01-09 21:27:30 +01:00
2ceda0691b adjacency: Make distance estimation customizable 2022-01-09 20:21:27 +01:00
ac9894e988 proximity: Remove method 2022-01-09 19:54:05 +01:00
e2b93babe5 Restructure classes and their responsibilities 2022-01-09 19:54:05 +01:00
35fb5e3884 Add cross-validation function 2022-01-04 14:58:49 +01:00
a347bf0ad4 plots: Refactor and improve 2021-12-02 17:23:18 +01:00
f997b5fdd7 plots: Add rankings plot 2021-12-02 15:28:03 +01:00
2f3dc80a2f plots: Add chromosome plot 2021-11-22 14:10:08 +01:00
e28bcaafed plots: Add position plot 2021-11-15 15:12:13 +01:00
28f9834984 plots: Move rank plot and add boxplot 2021-11-06 13:03:36 +01:00
d075380559 ranking: Add plot method 2021-11-05 23:05:40 +01:00
f98800f1e0 Add comparison feature 2021-11-05 19:08:50 +01:00
4992bb2930 ranking: Use S3 classes and rename optimize method 2021-11-05 14:47:33 +01:00
55958e0d85 preset: Turn into S3 class 2021-11-03 14:17:39 +01:00
c52d42c2b6 Initial commit 2021-10-19 13:39:55 +02:00