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										 |  |  | % Generated by roxygen2: do not edit by hand | 
					
						
							|  |  |  | % Please edit documentation in R/analyze.R | 
					
						
							|  |  |  | \name{analyze} | 
					
						
							|  |  |  | \alias{analyze} | 
					
						
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										 |  |  | \title{Analyze genes based on position data.} | 
					
						
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										 |  |  | \usage{ | 
					
						
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										 |  |  | analyze(preset, progress = NULL) | 
					
						
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										 |  |  | } | 
					
						
							|  |  |  | \arguments{ | 
					
						
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										 |  |  | \item{preset}{The preset to use which should be created using \code{\link[=preset]{preset()}}.} | 
					
						
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										 |  |  | 
 | 
					
						
							|  |  |  | \item{progress}{A function to be called for progress information. The | 
					
						
							|  |  |  | function should accept a number between 0.0 and 1.0 for the current | 
					
						
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										 |  |  | progress. If no function is provided, a simple text progress bar will be | 
					
						
							|  |  |  | shown.} | 
					
						
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										 |  |  | } | 
					
						
							|  |  |  | \value{ | 
					
						
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										 |  |  | An object containing the results of the analysis with the following | 
					
						
							|  |  |  | items: | 
					
						
							|  |  |  | \describe{ | 
					
						
							|  |  |  | \item{\code{preset}}{The preset that was used.} | 
					
						
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										 |  |  | \item{\code{scores}}{Table containing all scores for each gene.} | 
					
						
							|  |  |  | \item{\code{results}}{Results from the different methods including details.} | 
					
						
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										 |  |  | } | 
					
						
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										 |  |  | } | 
					
						
							|  |  |  | \description{ | 
					
						
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										 |  |  | Analyze genes based on position data. | 
					
						
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										 |  |  | } |