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44 lines
1.5 KiB
R
44 lines
1.5 KiB
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/app.R
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\name{run_app}
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\alias{run_app}
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\title{Run the application server.}
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\usage{
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run_app(
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reference_gene_sets,
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species_sets = NULL,
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methods = geposan::all_methods(),
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comparison_gene_sets = NULL,
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locked = FALSE,
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title = "Gene Position Analysis",
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port = 3464
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)
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}
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\arguments{
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\item{reference_gene_sets}{A list of predefined gene sets to be used as
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reference genes. This should be a named list containing vectors of gene IDs
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for each set. You have to provide \emph{at least one gene set} which will be
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selected as the initial reference gene set.}
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\item{species_sets}{A list of predefined species sets. This should be a named
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list containing vectors of species IDs for each set. The names will be used
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to present the species set throughout the user interface.}
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\item{methods}{A list of \code{\link[geposan:method]{geposan::method}} objects to be used for all
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presets. By default, all available methods will be used.}
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\item{comparison_gene_sets}{A named list of predefined gene sets to be used
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as comparison genes.}
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\item{locked}{Whether the application should be locked and prohibit
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performing custom analyses. If this is set to \code{TRUE}, only the predefined
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gene and species sets are available for customizing the analysis. This may
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be useful to limit resource usage on a publicly available instance.}
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\item{title}{Set the title of the application.}
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\item{port}{The port to serve the application on.}
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}
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\description{
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Run the application server.
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}
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