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Make preset methods configurable

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This commit is contained in:
Elias Projahn 2022-08-18 09:21:48 +02:00
parent e9033883a5
commit d61fc157f4
7 changed files with 37 additions and 23 deletions
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4
man/run_app.Rd
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@ -7,6 +7,7 @@
run_app(
reference_gene_sets,
species_sets = NULL,
methods = geposan::all_methods(),
comparison_gene_sets = NULL,
locked = FALSE,
title = "Gene Position Analysis",
@ -23,6 +24,9 @@ selected as the initial reference gene set.}
list containing vectors of species IDs for each set. The names will be used
to present the species set throughout the user interface.}
\item{methods}{A list of \code{\link[geposan:method]{geposan::method}} objects to be used for all
presets. By default, all available methods will be used.}
\item{comparison_gene_sets}{A named list of predefined gene sets to be used
as comparison genes.}