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preset_editor: Don't produce invalid presets

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This commit is contained in:
Elias Projahn 2022-01-20 11:04:49 +01:00
parent 8a9ae63350
commit aa4c655c53
1 changed files with 28 additions and 14 deletions
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42
R/preset_editor.R
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@ -86,6 +86,33 @@ preset_editor_server <- function(id) {
genes[suggested | verified == TRUE, id] genes[suggested | verified == TRUE, id]
)) ))
# Reactive containing the latest valid set of reference genes.
reference_gene_ids <- reactiveVal(
genes[verified | suggested == TRUE, id]
)
observeEvent(c(input$reference_genes, input$custom_reference_genes), {
if (input$reference_genes == "custom") {
inputs <- strsplit(input$custom_reference_genes, "\\s+")[[1]]
gene_ids <- if (input$identifier_type == "hgnc") {
geposan::genes[name %chin% inputs, id]
} else {
geposan::genes[id %chin% inputs, id]
}
if (length(gene_ids) >= 5) {
reference_gene_ids(gene_ids)
}
} else {
reference_gene_ids(if (input$reference_genes == "tpeold") {
genes[verified | suggested == TRUE, id]
} else if (input$reference_genes == "verified") {
genes[verified == TRUE, id]
})
}
})
new_preset <- reactive({ new_preset <- reactive({
species_ids <- if (input$species == "replicative") { species_ids <- if (input$species == "replicative") {
species_ids_replicative species_ids_replicative
@ -95,21 +122,8 @@ preset_editor_server <- function(id) {
input$custom_species input$custom_species
} }
reference_gene_ids <- if (input$reference_genes == "tpeold") {
genes[verified | suggested == TRUE, id]
} else if (input$reference_genes == "verified") {
genes[verified == TRUE, id]
} else {
inputs <- strsplit(input$custom_reference_genes, "\\s+")[[1]]
if (input$identifier_type == "hgnc") {
geposan::genes[name %chin% inputs, id]
} else {
geposan::genes[id %chin% inputs, id]
}
}
geposan::preset( geposan::preset(
reference_gene_ids, reference_gene_ids(),
methods = methods, methods = methods,
species_ids = species_ids, species_ids = species_ids,
gene_ids = genes$id gene_ids = genes$id