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preset editor: Simplify and add more options

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This commit is contained in:
Elias Projahn 2021-11-15 10:22:28 +01:00
parent b5957262a3
commit 9b9109b389
5 changed files with 124 additions and 59 deletions
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149
R/preset_editor.R
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@ -8,10 +8,10 @@ preset_editor_ui <- function(id) {
names(gene_choices) <- known_genes$name
verticalLayout(
h3("Preset"),
h3("Inputs"),
selectInput(
NS(id, "preset"),
"Default presets",
NS(id, "species"),
"Species to include",
choices = list(
"Replicatively aging species" = "replicative",
"All species" = "all",
@ -19,33 +19,54 @@ preset_editor_ui <- function(id) {
)
),
tabsetPanel(
id = NS(id, "customization"),
id = NS(id, "custom_species_panel"),
type = "hidden",
tabPanelBody(value = "none"),
tabPanelBody(value = "hide"),
tabPanelBody(
value = "custom",
value = "show",
shinyWidgets::pickerInput(
inputId = NS(id, "species"),
label = "Included species",
inputId = NS(id, "custom_species"),
choices = species_choices,
selected = species_replicative,
options = list(
"actions-box" = TRUE,
"live-search" = TRUE
),
multiple = TRUE
),
)
)
),
selectInput(
NS(id, "reference_genes"),
"Reference genes",
choices = list(
"Verified or suggested TPE-OLD genes" = "tpeold",
"Only verified TPE-OLD genes" = "verified",
"Customize" = "custom"
)
),
tabsetPanel(
id = NS(id, "custom_reference_genes_panel"),
type = "hidden",
tabPanelBody(value = "hide"),
tabPanelBody(
value = "show",
shinyWidgets::pickerInput(
inputId = NS(id, "reference_genes"),
label = "Reference genes",
inputId = NS(id, "custom_reference_genes"),
choices = gene_choices,
selected = genes_tpe_old,
options = list(
"actions-box" = TRUE,
"live-search" = TRUE
),
multiple = TRUE
),
)
)
),
tabsetPanel(
id = NS(id, "apply_panel"),
type = "hidden",
tabPanelBody(value = "hide"),
tabPanelBody(
value = "show",
actionButton(
NS(id, "apply_button"),
"Perform analysis",
@ -64,31 +85,97 @@ preset_editor_ui <- function(id) {
# @return A reactive containing the preset.
preset_editor_server <- function(id) {
moduleServer(id, function(input, output, session) {
result <- reactiveVal(preset_replicative_species)
current_preset <- reactiveVal(geposan::preset(
methods = method_ids,
species_ids = species[replicative == TRUE, id],
gene_ids = genes$id,
reference_gene_ids = genes[suggested | verified == TRUE, id]
))
observeEvent(input$preset, {
panel <- if (input$preset == "replicative") {
result(preset_replicative_species)
"none"
} else if (input$preset == "all") {
result(preset_all_species)
"none"
observeEvent(input$species, {
if (input$species == "custom") {
updateTabsetPanel(
session,
"custom_species_panel",
selected = "show"
)
} else {
"custom"
updateTabsetPanel(
session,
"custom_species_panel",
selected = "hide"
)
}
})
observeEvent(input$reference_genes, {
if (input$reference_genes == "custom") {
updateTabsetPanel(
session,
"custom_reference_genes_panel",
selected = "show"
)
} else {
updateTabsetPanel(
session,
"custom_reference_genes_panel",
selected = "hide"
)
}
})
new_preset <- reactive({
species_ids <- if (input$species == "replicative") {
species[replicative == TRUE, id]
} else if (input$species == "all") {
species$id
} else {
input$custom_species
}
updateTabsetPanel(session, "customization", selected = panel)
reference_gene_ids <- if (input$reference_genes == "tpeold") {
genes[verified | suggested == TRUE, id]
} else if (input$reference_genes == "verified") {
genes[verified == TRUE, id]
} else {
input$custom_reference_genes
}
geposan::preset(
methods = method_ids,
species_ids = species_ids,
gene_ids = genes$id,
reference_gene_ids = reference_gene_ids
)
})
observeEvent(
{ # nolint
current_preset()
new_preset()
},
{ # nolint
if (rlang::hash(new_preset()) !=
rlang::hash(current_preset())) {
updateTabsetPanel(
session,
"apply_panel",
selected = "show"
)
} else {
updateTabsetPanel(
session,
"apply_panel",
selected = "hide"
)
}
}
)
observeEvent(input$apply_button, {
result(geposan::preset(
methods = method_ids,
species_ids = input$species,
gene_ids = genes$id,
reference_gene_ids = input$reference_genes
))
current_preset(new_preset())
})
result
current_preset
})
}