data: Simplify data structure

This commit also adds the input data to the index.
This commit is contained in:
Elias Projahn 2021-06-24 20:20:46 +02:00
parent 914673c79c
commit 998009b418
205 changed files with 3296891 additions and 272 deletions

231
input/species.csv Normal file
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id,group,label
abrachyrhynchus,unknown,Pink-footed goose
acalliptera,unknown,Eastern happy
acarolinensis,shortlived,Anole lizard
acchrysaetos,unknown,Golden eagle
acitrinellus,unknown,Midas child
amelanoleuca,positive,Panda
amexicanus,leaveout,Mexican tetra
anancymaae,unknown,Ma's night monkey
aocellaris,unknown,Clown anemonefish
apercula,unknown,Orange clownfish
aplatyrhynchos,shortlived,Duck
apolyacanthus,unknown,Spiny chromis
applatyrhynchos,unknown,Duck
atestudineus,unknown,Climbing perch
bbbison,unknown,American bison
bgrunniens,unknown,Yak
bihybrid,replicative,Bos indicus hybrid
bmusculus,unknown,Blue whale
bmutus,unknown,Wild yak
bsplendens,unknown,Siamese fighting fish
btaurus,replicative,Cow
bthybrid,replicative,Bos taurus hybrid
cabingdonii,unknown,Abington island giant tortoise
capalliatus,unknown,Angola colobus
caperea,unknown,Brazilian guinea pig
catys,unknown,Sooty mangabey
cauratus,unknown,Goldfish
ccaeruleus,unknown,Blue tit
ccapucinus,unknown,Capuchin
ccarpio,unknown,Common carp
cdromedarius,unknown,Arabian camel
celegans,shortlived,Worm
cfamiliaris,replicative,Dog
cgchok1gshd,unknown,Chinese hamster
cgobio,unknown,Channel bull blenny
cgpicr,unknown,Chinese hamster (PICR)
charengus,unknown,Atlantic herring
chircus,replicative,Goat
choffmanni,positive,Sloth
chyarkandensis,unknown,Yarkand deer
cintestinalis,leaveout,Ciona intestinalis
cjacchus,replicative,Marmoset
cjaponica,unknown,Japanese quail
clanigera,unknown,Long-tailed chinchilla
cldingo,unknown,Dingo
clfamiliaris,replicative,Dog
clumpus,unknown,Lumpfish
cmilii,unknown,Elephant shark
cpbellii,unknown,Painted turtle
cporcellus,shortlived,Guinea pig
cporosus,unknown,Australian saltwater crocodile
cpugnax,unknown,Ruff
csabaeus,replicative,African Green Monkey
csavignyi,negative,Ciona savignyi
csemilaevis,unknown,Tongue sole
csyrichta,unknown,Tarsier
cvariegatus,unknown,Sheepshead minnow
cwagneri,unknown,Chacoan peccary
dclupeoides,unknown,Denticle herring
dlabrax,unknown,European seabass
dleucas,unknown,Beluga whale
dmelanogaster,shortlived,Fruitfly
dnovemcinctus,negative,Armadillo
dordii,shortlived,Kangaroo rat
drerio,shortlived,Zebrafish
eaasinus,unknown,Donkey
eburgeri,unknown,Hagfish
ecaballus,replicative,Horse
ecalabaricus,unknown,Reedfish
eelectricus,unknown,Electric eel
eeuropaeus,shortlived,Hedgehog
elucius,unknown,Northern pike
enaucrates,unknown,Live sharksucker
etelfairi,shortlived,Lesser hedgehog tenrec
falbicollis,leaveout,Flycatcher
fcatus,replicative,Cat
fheteroclitus,unknown,Mummichog
gaculeatus,leaveout,Stickleback
gaffinis,unknown,Western mosquitofish
gevgoodei,unknown,Goodes thornscrub tortoise
gfortis,unknown,Medium gound-finch
ggallus,shortlived,Chicken
ggorilla,replicative,Gorilla
gmorhua,leaveout,Cod
gwilldenowi,unknown,Blunt-snouted clingfish
hburtoni,unknown,Burton's mouthbrooder
hcomes,unknown,Tiger sail seahorse
hgfemale,unknown,Naked mole-rat female
hhucho,unknown,Huchen
hsapiens,replicative,Human
ipunctatus,unknown,Channel catfish
itridecemlineatus,shortlived,Squirrel
jhyemalis,unknown,Dark-eyed junco
jjaculus,unknown,Lesser Egyptian jerboa
kmarmoratus,unknown,Mangrove rivulus
lafricana,replicative,Elefant
lbergylta,unknown,Ballan wrasse
lcalcarifer,unknown,Barramundi perch
lcanadensis,unknown,Lynx
lchalumnae,leaveout,Coelacanth
lcrocea,unknown,Large yellow croaker
llaticaudata,unknown,Blue-ringed sea krait
lleishanense,unknown,Leishan spiny toad
loculatus,leaveout,Spotted gar
marmatus,unknown,Zig-zag eel
mauratus,unknown,Golden Hamster
mcaroli,unknown,Ryukyu mouse
mdomestica,leaveout,Mus m. domesticus
meugenii,negative,Wallaby
mfascicularis,replicative,Crab-eating macaque
mfuro,shortlived,Ferret
mgallopavo,shortlived,Turkey
mleucophaeus,unknown,Drill
mlucifugus,shortlived,Microbat
mmmarmota,unknown,Alpine marmot
mmola,unknown,Ocean sunfish
mmonoceros,unknown,Narwhal
mmoschiferus,unknown,Siberian musk deer
mmulatta,replicative,Macaque
mmurdjan,unknown,Pinecone soldierfish
mmurinus,replicative,Lemur
mmusculus,negative,Mouse
mnemestrina,replicative,Pig-tailed macaque
mochrogaster,unknown,Prairie vole
mpahari,unknown,Shrew mouse
mpfuro,unknown,Ferret
mspicilegus,unknown,Steppe mouse
mspretus,unknown,Algerian mouse
mundulatus,unknown,Budgerigar
mvitellinus,unknown,Golden-collared manakin
mzebra,unknown,Zebra mbuna
nbrichardi,unknown,Lyretail cichlid
neugenii,unknown,Wallaby
nfurzeri,unknown,Turquoise killifish
ngalili,unknown,Upper Galilee mountains blind mole rat
nleucogenys,replicative,Gibbon
nmeleagris,unknown,Helmeted guineafowl
nnaja,unknown,Indian cobra
nscutatus,unknown,Mainland tiger snake
nvison,unknown,American mink
oanatinus,negative,Platypus
oarambouillet,unknown,Sheep
oaries,replicative,Sheep (texel)
ocuniculus,unknown,Rabbit
odegus,unknown,Degu
ogarnettii,positive,Bushbaby
ojavanicus,unknown,Javanese ricefish
okisutch,unknown,Coho salmon
olatipes,leaveout,Japahese rice fish
olhni,unknown,Japanese rice fish (HNI)
olhsok,unknown,Japanese rice fish
omelastigma,unknown,Indian rice fish
omykiss,unknown,Oncorhynchus mykiss
oniloticus,leaveout,Nile tilapia
oprinceps,shortlived,Pika
osinensis,unknown,Chinese medaka
otshawytscha,unknown,Chinook salmon
pabelii,replicative,Orang utan
panubis,replicative,Olive baboon
pcapensis,shortlived,Hyrax
pcatodon,unknown,Sperm whale
pcinereus,unknown,Koala
pcoquereli,unknown,Coquerel's sifaka
pformosa,leaveout,Amazon mollie
pkingsleyae,unknown,P. kingsleyae
platipinna,unknown,Sailfin molly
pleo,unknown,Lion
pmajor,unknown,Great Tit
pmarinus,leaveout,Lamprey
pmbairdii,unknown,Northern American deer mouse
pmuralis,unknown,Common wall lizard
pnattereri,unknown,Red-bellied piranha
pnyererei,unknown,Makobe Island cichlid
ppaniscus,replicative,Bonobo
ppardus,unknown,Leopard
pranga,unknown,Indian glassy fish
preticulata,unknown,Guppy
psimus,unknown,Greater bamboo lemur
psinensis,maybe,Chinese softshell turtle
psinus,unknown,Vaquita
ptaltaica,unknown,Tiger
ptephrosceles,unknown,Ugandan red Colobus
ptextilis,unknown,Eastern brown snake
ptroglodytes,replicative,Chimp
pvampyrus,unknown,Megabat
rbieti,unknown,Black snub-nosed monkey
rferrumequinum,unknown,Greater horseshoe bat
rnorvegicus,negative,Rat
rroxellana,unknown,Golden snub-nosed monkey
saraneus,shortlived,Shrew
saurata,unknown,Gilthead seabream
sbboliviensis,unknown,Bolivian squirrel monkey
scanaria,unknown,Common canary
scaustralis,unknown,African austrich
scerevisiae,shortlived,Yeast
sdumerili,unknown,Greater amberjack
sfasciatus,unknown,Jewelled Blenny
sformosus,unknown,Asian arowana
sgrahami,unknown,Golden-line barbel
shabroptila,unknown,Kakapo (parrot)
sharrisii,shoatlived,Tasmanian devil
sldorsalis,unknown,Yellowtail amberjack
slucioperca,unknown,Pike-perch
smaximus,unknown,Turbot
smerianae,unknown,Argentine black and white tegu
sorbicularis,unknown,Orbiculate cardinalfish
spunctatus,unknown,Tuatara
spartitus,unknown,Bicolor damselfish
ssalar,unknown,Atlantic salmon
sscrofa,replicative,Pig
strutta,unknown,River trout
svulgaris,unknown,Eurasian red squirrel
tbelangeri,leaveout,Tree shrew
tctriunguis,unknown,Three-toad box turtle
tgelada,replicative,Gelada
tguttata,shortlived,Zebra finch
tnigroviridis,leaveout,Tetraodon
trubripes,leaveout,Fugu
tsyrichta,leaveout,Tarsius/Carlito syrichta
ttruncatus,maybe,Dolphin
uamericanus,unknown,American black bear
umaritimus,unknown,Polar bear
uparryii,unknown,Arctic ground squirrel
vpacos,maybe,Alpaca
vursinus,unknown,Common wombat
vvulpes,unknown,Red fox
xcouchianus,unknown,Monterrey platyfish
xmaculatus,shortlived,Platyfish
xtropicalis,shortlived,Frog
zalbicollis,unknown,White-throated sparrow
1 id group label
2 abrachyrhynchus unknown Pink-footed goose
3 acalliptera unknown Eastern happy
4 acarolinensis shortlived Anole lizard
5 acchrysaetos unknown Golden eagle
6 acitrinellus unknown Midas child
7 amelanoleuca positive Panda
8 amexicanus leaveout Mexican tetra
9 anancymaae unknown Ma's night monkey
10 aocellaris unknown Clown anemonefish
11 apercula unknown Orange clownfish
12 aplatyrhynchos shortlived Duck
13 apolyacanthus unknown Spiny chromis
14 applatyrhynchos unknown Duck
15 atestudineus unknown Climbing perch
16 bbbison unknown American bison
17 bgrunniens unknown Yak
18 bihybrid replicative Bos indicus hybrid
19 bmusculus unknown Blue whale
20 bmutus unknown Wild yak
21 bsplendens unknown Siamese fighting fish
22 btaurus replicative Cow
23 bthybrid replicative Bos taurus hybrid
24 cabingdonii unknown Abington island giant tortoise
25 capalliatus unknown Angola colobus
26 caperea unknown Brazilian guinea pig
27 catys unknown Sooty mangabey
28 cauratus unknown Goldfish
29 ccaeruleus unknown Blue tit
30 ccapucinus unknown Capuchin
31 ccarpio unknown Common carp
32 cdromedarius unknown Arabian camel
33 celegans shortlived Worm
34 cfamiliaris replicative Dog
35 cgchok1gshd unknown Chinese hamster
36 cgobio unknown Channel bull blenny
37 cgpicr unknown Chinese hamster (PICR)
38 charengus unknown Atlantic herring
39 chircus replicative Goat
40 choffmanni positive Sloth
41 chyarkandensis unknown Yarkand deer
42 cintestinalis leaveout Ciona intestinalis
43 cjacchus replicative Marmoset
44 cjaponica unknown Japanese quail
45 clanigera unknown Long-tailed chinchilla
46 cldingo unknown Dingo
47 clfamiliaris replicative Dog
48 clumpus unknown Lumpfish
49 cmilii unknown Elephant shark
50 cpbellii unknown Painted turtle
51 cporcellus shortlived Guinea pig
52 cporosus unknown Australian saltwater crocodile
53 cpugnax unknown Ruff
54 csabaeus replicative African Green Monkey
55 csavignyi negative Ciona savignyi
56 csemilaevis unknown Tongue sole
57 csyrichta unknown Tarsier
58 cvariegatus unknown Sheepshead minnow
59 cwagneri unknown Chacoan peccary
60 dclupeoides unknown Denticle herring
61 dlabrax unknown European seabass
62 dleucas unknown Beluga whale
63 dmelanogaster shortlived Fruitfly
64 dnovemcinctus negative Armadillo
65 dordii shortlived Kangaroo rat
66 drerio shortlived Zebrafish
67 eaasinus unknown Donkey
68 eburgeri unknown Hagfish
69 ecaballus replicative Horse
70 ecalabaricus unknown Reedfish
71 eelectricus unknown Electric eel
72 eeuropaeus shortlived Hedgehog
73 elucius unknown Northern pike
74 enaucrates unknown Live sharksucker
75 etelfairi shortlived Lesser hedgehog tenrec
76 falbicollis leaveout Flycatcher
77 fcatus replicative Cat
78 fheteroclitus unknown Mummichog
79 gaculeatus leaveout Stickleback
80 gaffinis unknown Western mosquitofish
81 gevgoodei unknown Goodes thornscrub tortoise
82 gfortis unknown Medium gound-finch
83 ggallus shortlived Chicken
84 ggorilla replicative Gorilla
85 gmorhua leaveout Cod
86 gwilldenowi unknown Blunt-snouted clingfish
87 hburtoni unknown Burton's mouthbrooder
88 hcomes unknown Tiger sail seahorse
89 hgfemale unknown Naked mole-rat female
90 hhucho unknown Huchen
91 hsapiens replicative Human
92 ipunctatus unknown Channel catfish
93 itridecemlineatus shortlived Squirrel
94 jhyemalis unknown Dark-eyed junco
95 jjaculus unknown Lesser Egyptian jerboa
96 kmarmoratus unknown Mangrove rivulus
97 lafricana replicative Elefant
98 lbergylta unknown Ballan wrasse
99 lcalcarifer unknown Barramundi perch
100 lcanadensis unknown Lynx
101 lchalumnae leaveout Coelacanth
102 lcrocea unknown Large yellow croaker
103 llaticaudata unknown Blue-ringed sea krait
104 lleishanense unknown Leishan spiny toad
105 loculatus leaveout Spotted gar
106 marmatus unknown Zig-zag eel
107 mauratus unknown Golden Hamster
108 mcaroli unknown Ryukyu mouse
109 mdomestica leaveout Mus m. domesticus
110 meugenii negative Wallaby
111 mfascicularis replicative Crab-eating macaque
112 mfuro shortlived Ferret
113 mgallopavo shortlived Turkey
114 mleucophaeus unknown Drill
115 mlucifugus shortlived Microbat
116 mmmarmota unknown Alpine marmot
117 mmola unknown Ocean sunfish
118 mmonoceros unknown Narwhal
119 mmoschiferus unknown Siberian musk deer
120 mmulatta replicative Macaque
121 mmurdjan unknown Pinecone soldierfish
122 mmurinus replicative Lemur
123 mmusculus negative Mouse
124 mnemestrina replicative Pig-tailed macaque
125 mochrogaster unknown Prairie vole
126 mpahari unknown Shrew mouse
127 mpfuro unknown Ferret
128 mspicilegus unknown Steppe mouse
129 mspretus unknown Algerian mouse
130 mundulatus unknown Budgerigar
131 mvitellinus unknown Golden-collared manakin
132 mzebra unknown Zebra mbuna
133 nbrichardi unknown Lyretail cichlid
134 neugenii unknown Wallaby
135 nfurzeri unknown Turquoise killifish
136 ngalili unknown Upper Galilee mountains blind mole rat
137 nleucogenys replicative Gibbon
138 nmeleagris unknown Helmeted guineafowl
139 nnaja unknown Indian cobra
140 nscutatus unknown Mainland tiger snake
141 nvison unknown American mink
142 oanatinus negative Platypus
143 oarambouillet unknown Sheep
144 oaries replicative Sheep (texel)
145 ocuniculus unknown Rabbit
146 odegus unknown Degu
147 ogarnettii positive Bushbaby
148 ojavanicus unknown Javanese ricefish
149 okisutch unknown Coho salmon
150 olatipes leaveout Japahese rice fish
151 olhni unknown Japanese rice fish (HNI)
152 olhsok unknown Japanese rice fish
153 omelastigma unknown Indian rice fish
154 omykiss unknown Oncorhynchus mykiss
155 oniloticus leaveout Nile tilapia
156 oprinceps shortlived Pika
157 osinensis unknown Chinese medaka
158 otshawytscha unknown Chinook salmon
159 pabelii replicative Orang utan
160 panubis replicative Olive baboon
161 pcapensis shortlived Hyrax
162 pcatodon unknown Sperm whale
163 pcinereus unknown Koala
164 pcoquereli unknown Coquerel's sifaka
165 pformosa leaveout Amazon mollie
166 pkingsleyae unknown P. kingsleyae
167 platipinna unknown Sailfin molly
168 pleo unknown Lion
169 pmajor unknown Great Tit
170 pmarinus leaveout Lamprey
171 pmbairdii unknown Northern American deer mouse
172 pmuralis unknown Common wall lizard
173 pnattereri unknown Red-bellied piranha
174 pnyererei unknown Makobe Island cichlid
175 ppaniscus replicative Bonobo
176 ppardus unknown Leopard
177 pranga unknown Indian glassy fish
178 preticulata unknown Guppy
179 psimus unknown Greater bamboo lemur
180 psinensis maybe Chinese softshell turtle
181 psinus unknown Vaquita
182 ptaltaica unknown Tiger
183 ptephrosceles unknown Ugandan red Colobus
184 ptextilis unknown Eastern brown snake
185 ptroglodytes replicative Chimp
186 pvampyrus unknown Megabat
187 rbieti unknown Black snub-nosed monkey
188 rferrumequinum unknown Greater horseshoe bat
189 rnorvegicus negative Rat
190 rroxellana unknown Golden snub-nosed monkey
191 saraneus shortlived Shrew
192 saurata unknown Gilthead seabream
193 sbboliviensis unknown Bolivian squirrel monkey
194 scanaria unknown Common canary
195 scaustralis unknown African austrich
196 scerevisiae shortlived Yeast
197 sdumerili unknown Greater amberjack
198 sfasciatus unknown Jewelled Blenny
199 sformosus unknown Asian arowana
200 sgrahami unknown Golden-line barbel
201 shabroptila unknown Kakapo (parrot)
202 sharrisii shoatlived Tasmanian devil
203 sldorsalis unknown Yellowtail amberjack
204 slucioperca unknown Pike-perch
205 smaximus unknown Turbot
206 smerianae unknown Argentine black and white tegu
207 sorbicularis unknown Orbiculate cardinalfish
208 spunctatus unknown Tuatara
209 spartitus unknown Bicolor damselfish
210 ssalar unknown Atlantic salmon
211 sscrofa replicative Pig
212 strutta unknown River trout
213 svulgaris unknown Eurasian red squirrel
214 tbelangeri leaveout Tree shrew
215 tctriunguis unknown Three-toad box turtle
216 tgelada replicative Gelada
217 tguttata shortlived Zebra finch
218 tnigroviridis leaveout Tetraodon
219 trubripes leaveout Fugu
220 tsyrichta leaveout Tarsius/Carlito syrichta
221 ttruncatus maybe Dolphin
222 uamericanus unknown American black bear
223 umaritimus unknown Polar bear
224 uparryii unknown Arctic ground squirrel
225 vpacos maybe Alpaca
226 vursinus unknown Common wombat
227 vvulpes unknown Red fox
228 xcouchianus unknown Monterrey platyfish
229 xmaculatus shortlived Platyfish
230 xtropicalis shortlived Frog
231 zalbicollis unknown White-throated sparrow