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Add options to configure default gene sets

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This commit is contained in:
Elias Projahn 2022-05-19 16:24:23 +02:00
parent 22f5e86625
commit 74d7865389
9 changed files with 391 additions and 370 deletions
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17
man/run_app.Rd
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@ -4,9 +4,24 @@
\alias{run_app}
\title{Run the application server.}
\usage{
run_app(port = 3464)
run_app(gene_sets, species_sets = NULL, locked = FALSE, port = 3464)
}
\arguments{
\item{gene_sets}{A list of predefined gene sets. This should be a named list
containing vectors of gene IDs for each set. The names will be used to
present the gene set throughout the user interface. You have to provide \emph{at
least one gene set} which will be selected as the initial reference gene
set.}
\item{species_sets}{A list of predefined species sets. This should be a named
list containing vectors of species IDs for each set. The names will be used
to present the species set throughout the user interface.}
\item{locked}{Whether the application should be locked and prohibit
performing custom analyses. If this is set to \code{TRUE}, only the predefined
gene and species sets are available for customizing the analysis. This may
be useful to limit resource usage on a publicly available instance.}
\item{port}{The port to serve the application on.}
}
\description{