diff --git a/R/data.R b/R/data.R index b90a385..39bc399 100644 --- a/R/data.R +++ b/R/data.R @@ -94,6 +94,9 @@ methods <- list( # Gene IDs of known or suggested TPE-OLD genes. genes_tpe_old <- genes[suggested | verified == TRUE, id] +# Species IDs for replicatively aging species. +species_replicative <- species[replicative == TRUE, id] + # Preset for [geposan] including all species and TPE-OLD genes for reference. preset_all_species <- geposan::preset( methods = c("clusteriness", "correlation", "proximity", "neural"), @@ -106,7 +109,7 @@ preset_all_species <- geposan::preset( # TPE-OLD genes for reference. preset_replicative_species <- geposan::preset( methods = c("clusteriness", "correlation", "proximity", "neural"), - species = species_ids_replicative, + species = species_replicative, genes = genes$id, reference_genes = genes_tpe_old ) diff --git a/R/preset_editor.R b/R/preset_editor.R index f25fb6c..aa66bb1 100644 --- a/R/preset_editor.R +++ b/R/preset_editor.R @@ -3,14 +3,10 @@ preset_editor_ui <- function(id) { species_choices <- species$id names(species_choices) <- species$name - species_selected <- species_ids_replicative - known_genes <- genes[name != ""] gene_choices <- known_genes$id names(gene_choices) <- known_genes$name - genes_selected <- genes[suggested | verified == TRUE, id] - verticalLayout( h3("Preset"), selectInput( @@ -28,7 +24,7 @@ preset_editor_ui <- function(id) { inputId = NS(id, "species"), label = "Included species", choices = species_choices, - selected = species_selected, + selected = species_replicative, options = list( "actions-box" = TRUE, "live-search" = TRUE @@ -39,7 +35,7 @@ preset_editor_ui <- function(id) { inputId = NS(id, "reference_genes"), label = "Reference genes", choices = gene_choices, - selected = genes_selected, + selected = genes_tpe_old, options = list( "actions-box" = TRUE, "live-search" = TRUE