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Adapt to changes in geposan

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This commit is contained in:
Elias Projahn 2021-12-16 13:52:14 +01:00
parent f1337f0331
commit 2bf96ffd38
4 changed files with 61 additions and 86 deletions
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28
R/data.R
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@ -68,33 +68,7 @@ genes <- geposan::genes[, .(
)]
# All available methods from [geposan] and additional information on them.
methods <- list(
list(
id = "clusteriness",
name = "Clustering",
description = "Clustering of genes"
),
list(
id = "correlation",
name = "Correlation",
description = "Correlation with known genes"
),
list(
id = "neural",
name = "Neural",
description = "Assessment by neural network"
),
list(
id = "adjacency",
name = "Adjacency",
description = "Adjacency to reference genes"
),
list(
id = "proximity",
name = "Proximity",
description = "Proximity to telomeres"
)
)
methods <- geposan::all_methods()
# IDs of methods for geposan.
method_ids <- sapply(methods, function(method) method$id)