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Separate reference and comparison gene sets

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This commit is contained in:
Elias Projahn 2022-08-18 09:02:53 +02:00
parent 4e0eb523ea
commit 04ab4f4a82
5 changed files with 28 additions and 19 deletions
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15
man/run_app.Rd
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@ -5,24 +5,27 @@
\title{Run the application server.}
\usage{
run_app(
gene_sets,
reference_gene_sets,
species_sets = NULL,
comparison_gene_sets = NULL,
locked = FALSE,
title = "Gene Position Analysis",
port = 3464
)
}
\arguments{
\item{gene_sets}{A list of predefined gene sets. This should be a named list
containing vectors of gene IDs for each set. The names will be used to
present the gene set throughout the user interface. You have to provide \emph{at
least one gene set} which will be selected as the initial reference gene
set.}
\item{reference_gene_sets}{A list of predefined gene sets to be used as
reference genes. This should be a named list containing vectors of gene IDs
for each set. You have to provide \emph{at least one gene set} which will be
selected as the initial reference gene set.}
\item{species_sets}{A list of predefined species sets. This should be a named
list containing vectors of species IDs for each set. The names will be used
to present the species set throughout the user interface.}
\item{comparison_gene_sets}{A named list of predefined gene sets to be used
as comparison genes.}
\item{locked}{Whether the application should be locked and prohibit
performing custom analyses. If this is set to \code{TRUE}, only the predefined
gene and species sets are available for customizing the analysis. This may