DESCRIPTION

@@ -1,6 +1,6 @@
 Package: geposan
 Title: Gene Position Analysis
-Version: 1.1.0
+Version: 1.0.0
 Authors@R:
     person(
         "Elias",
@@ -28,7 +28,9 @@ Imports:
     rlang,
     progress
 Suggests:
+    biomaRt,
+    httr,
     plotly,
     rlog,
-    RMariaDB,
+    stringr,
     usethis

R/plots.R

@@ -718,9 +718,8 @@ plot_scores_by_position <- function(ranking,
         "Percentile: {round(percentile * 100, digits = 2)}%"
       ),
       marker = list(
-        size = 3,
-        color = "#919191",
-        opacity = 0.5
+        color = base_color(),
+        size = 5
       ),
       hoverinfo = "text"
     ) |>

README.md

@@ -17,17 +17,6 @@ remotes::install_github("johrpan/geposan")
 See [this page](https://remotes.r-lib.org/reference/install_git.html) for more
 information on this command.
 
-## Publication
-
-This method and its implementation have been peer-reviewed and published in
-NAR Genomics and Bioinformatics. If you use the package in your research or
-would like to refer to our methodology, please cite the following paper:
-
-Elias F Projahn, Georg Fuellen, Michael Walter, Steffen Möller, Proposing
-candidate genes under telomeric control based on cross-species position data,
-NAR Genomics and Bioinformatics, Volume 6, Issue 2, June 2024, lqae037,
-https://doi.org/10.1093/nargab/lqae037
-
 ## Graphical interface
 
 Please also take a look at the interactive graphical web interface for geposan

inst/CITATION

@@ -1,11 +0,0 @@
-bibentry(
-  bibtype = "Article",
-  title = "Proposing candidate genes under telomeric control based on cross-species position data",
-  author = "Elias F Projahn, Georg Fuellen, Michael Walter, Steffen Möller",
-  journal = "NAR Genomics and Bioinformatics",
-  year = 2024,
-  volume = 6,
-  number = 2,
-  pages = "lqae037",
-  doi = "10.1093/nargab/lqae037"
-)