Restructure classes and their responsibilities

man/adjacency.Rd

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+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/adjacency.R
+\name{adjacency}
+\alias{adjacency}
+\title{Score genes based on their proximity to the reference genes.}
+\usage{
+adjacency()
+}
+\value{
+An object of class \code{geposan_method}.
+}
+\description{
+This method finds the distance value with the maximum density for each gene
+(i.e. the mode of its estimated distribution). Genes are scored by comparing
+those distance values with the values of the reference genes.
+}