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Allow customizing method metadata
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12 changed files with 139 additions and 30 deletions
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@ -1,5 +1,8 @@
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#' Score genes based on their correlation with the reference genes.
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#'
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#' @param id Unique ID for the method and its results.
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#' @param name Human readable name for the method.
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#' @param description Method description.
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#' @param summarize A function for combining the different correlation
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#' coefficients into one metric. By default, [stats::median()] is used. Other
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#' suggested options include [max()] and [mean()].
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@ -7,11 +10,14 @@
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#' @return An object of class `geposan_method`.
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#'
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#' @export
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correlation <- function(summarize = stats::median) {
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correlation <- function(id = "correlation",
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name = "Correlation",
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description = "Correlation with reference genes",
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summarize = stats::median) {
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method(
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id = "correlation",
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name = "Correlation",
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description = "Correlation with reference genes",
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id = id,
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name = name,
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description = description,
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function(preset, progress) {
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species_ids <- preset$species_ids
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gene_ids <- preset$gene_ids
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