From c633b17db6a23b02024b42bcc347972909975c08 Mon Sep 17 00:00:00 2001
From: Elias Projahn <elias@johrpan.de>
Date: Wed, 26 Jan 2022 09:58:33 +0100
Subject: [PATCH] Rename method source files

---
 R/{adjacency.R => method_adjacency.R}                 | 0
 R/{clustering.R => method_clustering.R}               | 0
 R/{correlation.R => method_correlation.R}             | 0
 R/{neural.R => method_neural.R}                       | 0
 R/{species_adjacency.R => method_species_adjacency.R} | 0
 man/adjacency.Rd                                      | 2 +-
 man/clusteriness.Rd                                   | 2 +-
 man/clustering.Rd                                     | 2 +-
 man/correlation.Rd                                    | 2 +-
 man/densest.Rd                                        | 2 +-
 man/neural.Rd                                         | 2 +-
 man/species_adjacency.Rd                              | 2 +-
 12 files changed, 7 insertions(+), 7 deletions(-)
 rename R/{adjacency.R => method_adjacency.R} (100%)
 rename R/{clustering.R => method_clustering.R} (100%)
 rename R/{correlation.R => method_correlation.R} (100%)
 rename R/{neural.R => method_neural.R} (100%)
 rename R/{species_adjacency.R => method_species_adjacency.R} (100%)

diff --git a/R/adjacency.R b/R/method_adjacency.R
similarity index 100%
rename from R/adjacency.R
rename to R/method_adjacency.R
diff --git a/R/clustering.R b/R/method_clustering.R
similarity index 100%
rename from R/clustering.R
rename to R/method_clustering.R
diff --git a/R/correlation.R b/R/method_correlation.R
similarity index 100%
rename from R/correlation.R
rename to R/method_correlation.R
diff --git a/R/neural.R b/R/method_neural.R
similarity index 100%
rename from R/neural.R
rename to R/method_neural.R
diff --git a/R/species_adjacency.R b/R/method_species_adjacency.R
similarity index 100%
rename from R/species_adjacency.R
rename to R/method_species_adjacency.R
diff --git a/man/adjacency.Rd b/man/adjacency.Rd
index 4eac7b9..3643298 100644
--- a/man/adjacency.Rd
+++ b/man/adjacency.Rd
@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/adjacency.R
+% Please edit documentation in R/method_adjacency.R
 \name{adjacency}
 \alias{adjacency}
 \title{Score genes based on their proximity to the reference genes.}
diff --git a/man/clusteriness.Rd b/man/clusteriness.Rd
index 3e9a49c..6d100e1 100644
--- a/man/clusteriness.Rd
+++ b/man/clusteriness.Rd
@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/clustering.R
+% Please edit documentation in R/method_clustering.R
 \name{clusteriness}
 \alias{clusteriness}
 \title{Perform a cluster analysis.}
diff --git a/man/clustering.Rd b/man/clustering.Rd
index a0c04a6..55ab855 100644
--- a/man/clustering.Rd
+++ b/man/clustering.Rd
@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/clustering.R
+% Please edit documentation in R/method_clustering.R
 \name{clustering}
 \alias{clustering}
 \title{Process genes clustering their distance to telomeres.}
diff --git a/man/correlation.Rd b/man/correlation.Rd
index dda7070..4261806 100644
--- a/man/correlation.Rd
+++ b/man/correlation.Rd
@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/correlation.R
+% Please edit documentation in R/method_correlation.R
 \name{correlation}
 \alias{correlation}
 \title{Score genes based on their correlation with the reference genes.}
diff --git a/man/densest.Rd b/man/densest.Rd
index 252c6f1..181a270 100644
--- a/man/densest.Rd
+++ b/man/densest.Rd
@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/adjacency.R
+% Please edit documentation in R/method_adjacency.R
 \name{densest}
 \alias{densest}
 \title{Find the densest value in the data.}
diff --git a/man/neural.Rd b/man/neural.Rd
index 8b7e040..46419f1 100644
--- a/man/neural.Rd
+++ b/man/neural.Rd
@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/neural.R
+% Please edit documentation in R/method_neural.R
 \name{neural}
 \alias{neural}
 \title{Find genes by training and applying a neural network.}
diff --git a/man/species_adjacency.Rd b/man/species_adjacency.Rd
index 0607559..b2bf81f 100644
--- a/man/species_adjacency.Rd
+++ b/man/species_adjacency.Rd
@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/species_adjacency.R
+% Please edit documentation in R/method_species_adjacency.R
 \name{species_adjacency}
 \alias{species_adjacency}
 \title{Score genes based on their adjacency to the reference genes within species.}