plots: Sort species in input data plot

man/plot_positions.Rd

@@ -4,13 +4,16 @@
 \alias{plot_positions}
 \title{Plot gene positions.}
 \usage{
-plot_positions(species_ids, gene_sets)
+plot_positions(species_ids, gene_sets, reference_gene_ids = NULL)
 }
 \arguments{
 \item{species_ids}{IDs of species to show in the plot.}
 
 \item{gene_sets}{A list of gene sets (containing vectors of gene IDs) that
 will be highlighted in the plot. The names will be used as labels.}
+
+\item{reference_gene_ids}{Optionally, a set of reference genes that will be
+used to reorder the species.}
 }
 \description{
 This function requires the package \code{plotly}.