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adjacency: Revert to density estimate

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This reverts commit 23bb499d3a.
This commit is contained in:
Elias Projahn 2022-01-13 18:35:02 +01:00
parent 0087f83247
commit 8cda3e8e83
4 changed files with 50 additions and 4 deletions
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4
man/adjacency.Rd
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@ -4,11 +4,11 @@
\alias{adjacency}
\title{Score genes based on their proximity to the reference genes.}
\usage{
adjacency(estimate = stats::median, combination = min)
adjacency(estimate = densest, combination = min)
}
\arguments{
\item{estimate}{A function that will be used to summarize the distance
values for each gene. By default, \code{\link[=median]{median()}} is used.}
values for each gene. See \code{\link[=densest]{densest()}} for the default implementation.}
\item{combination}{A function that will be used to combine the different
distances to the reference genes. By default \code{\link[=min]{min()}} is used. That means