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Use ensembl database server instead of biomart

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This commit is contained in:
Elias Projahn 2023-11-08 12:15:26 +01:00
parent 948cb337db
commit 795fe99003
16 changed files with 373 additions and 452 deletions
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4
man/species.Rd
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@ -7,8 +7,10 @@
\format{
A \link{data.table} with the following columns:
\describe{
\item{id}{Unique species ID}
\item{id}{Unique species ID, these are NCBI taxon IDs}
\item{name}{Human readable species name}
\item{scientific_name}{Scientific name of the species}
\item{table_name}{Table name within the Ensembl database}
\item{n_chromosomes}{Number of chromosomes}
\item{median_chromosome_length}{Median length of chromosomes}
}