diff --git a/R/preset.R b/R/preset.R index c3fd23e..ad15018 100644 --- a/R/preset.R +++ b/R/preset.R @@ -7,7 +7,7 @@ #' orthologs for less than 25% of the input species will be excluded from the #' preset and the analyis. See the different method functions for the available #' methods: [clustering()], [correlation()], [neural()], [adjacency()] and -#' [proximity()]. +#' [species_adjacency()]. #' #' @param reference_gene_ids IDs of reference genes to compare to. #' @param methods List of methods to apply. diff --git a/man/preset.Rd b/man/preset.Rd index bf614f6..3f3d44d 100644 --- a/man/preset.Rd +++ b/man/preset.Rd @@ -31,5 +31,5 @@ filtered based on how many species have data for them. Genes which only have orthologs for less than 25\% of the input species will be excluded from the preset and the analyis. See the different method functions for the available methods: \code{\link[=clustering]{clustering()}}, \code{\link[=correlation]{correlation()}}, \code{\link[=neural]{neural()}}, \code{\link[=adjacency]{adjacency()}} and -\code{\link[=proximity]{proximity()}}. +\code{\link[=species_adjacency]{species_adjacency()}}. }