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ranking: Filter out species with too few species

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Elias Projahn 2021-11-12 10:25:07 +01:00
parent 910eb06fe9
commit 4dda7fa49e
3 changed files with 41 additions and 7 deletions
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5
man/ranking.Rd
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@ -4,13 +4,16 @@
\alias{ranking}
\title{Rank the results by computing a score.}
\usage{
ranking(analysis, weights)
ranking(analysis, weights, min_n_species = 10)
}
\arguments{
\item{analysis}{Analysis object resulting from \code{\link[=analyze]{analyze()}}.}
\item{weights}{Named list pairing method names with weighting factors. Only
methods that are contained within this list will be included.}
\item{min_n_species}{Minimum number of required species per gene. Genes that
have fewer species will not be included in the ranking.}
}
\value{
A ranking object. The object extends the analysis result with